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Christodoulos Floudas

Selected Publications

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  1. "Mathematical Modeling and Efficient Optimization Methods for the Distance-Dependent Rearrangement Clustering Problem." J. of Global Optimization, 45, 111-129, 2009 [with S.R. McAllister, and P.A. DiMaggio].
  2. "Enhanced Bounding Techniques to Reduce the Protein Conformational Search Space." Optimization Methods and Software, 24, 837-855, 2009 [with S.R. McAllister].
  3. "Operational Planning Framework for Multisite Production and Distribution Networks." Computers & Chemical Engineering, 33, 1036-1050, 2009 [with P.M. Verderame].
  4. "A Review of Recent Advances In Global Optimization." J. of Global Optimization, 45, 3-38, 2009 [with C.E. Gounaris].
  5. "Towards Accurate Residue-Residue Contact Prediction for Alpha Helical Proteins via Integer Linear Optimization." Proteins, 74, 929-947, 2009 [with R. Rajgaria, and S.R. McAllister].
  6. "Novel Unified Modeling Approach for Short-term Scheduling." Industrial Engineering Chemistry Research, 48, 2947-2964, 2009 [with M.A. Shaik].
  7. "Global Optimization of Gas Lifting Operations: A Comparative Study of Piecewise Linear Formulations." Industrial Engineering Chemistry Research, 48, 6098-6104, 2009 [with R.Misener and C.E. Gounaris].
  8. "Selecting the optimal target company based on synergy calculation for the vertical merger in a petrochemical complex." Industrial & Engineering Chemistry Research, 48, 151-1521, 2009. [with S.G. Yoon, S. Park, J. Lee and P.M. Verderame].
  9. "Computational comparison of piecewise-linear relaxations for pooling problems." Industrial & Engineering Chemistry Research, 48, 5742-5766, 2009 [with C.E. Gounaris, and R. Misener]
  10. "Advances in global optimization for standard, generalized, and extended pooling problems with the EPA complex emissions model constraints." Design for Energy and the Environment, FOCAPD-2009, M.M. Halwagi and A.A. Linninger (Eds.), pp. 1053-1071, 2009 [with R. Misener and C. E. Gounaris].
  11. "Operational planning of large scale industrial batch plants under demand due date and amount uncertainty: I. Robust optimization framework." Industrial Engineering Chemistry Research, 48, 7214-7231, 2009 [with P.M. Verderame].
  12. "Adsorption of fermentation inhibitors from lignocellulosic biomass hydrolyzates for improved ethanol yield and value-added product recovery." Microporous Mesoporous Materials, 122, 143-148, 2009 [with R. Ranjan, S. Thust, C.E. Gounaris, M. Woo, M.V. Keitz, K.J. Valentas, J. Wei and M. Tsapatsis].
  13. "High-throughput characterization of combinatorial histone codes." Molecular & Cellular Proteomics, 8 (10), 2266-2284, (2009) (selected for Faculty of 1000 Biology). [with N.L. Young, P. A. DiMaggio, M.D. Plazas-Mayorca, R.C. Baliban and B.A. Garcia].
  14. "Search engines for shape selectivity." Catalysis Today, 133(1-2), 234-241, 2009 [with J. Wei and C. E. Gounaris].
  15. "A mixed-integer optimization framework for the identification and quantification of targeted post-translational modifications of highly modified proteins using multiplexed ETD tandem mass spectrometry." Molecular & Cellular Proteomics, 8(11), 2527-2543, 2009 [with P.A. DiMaggio, N.L. Young, R.C. Baliban, and B.A. Garcia].
  16. "Advances for the pooling problem: Modeling, global optimization and computational studies." Appl. Comput. Math., 8, 3-22 2009 [with R. Misener].
  17. "Selecting high quality protein structures from diverse conformational ensembles." Biophysical J., 96(6), 1728-1736, 2009 [with A. Subramani and P.A. DiMaggio].
  18. "Mathematical modeling and global optimization of large scale extended pooling problems with the EPA complex emissions constraints." Computers & Chemical Engineering, submitted for publication, 2009. [with R. Misener and C.E. Gounaris].
  19. "Reconstitution and Engineering of Apoptotic Protein Interactions on the Bacterial Cell Surface." J. Molecular Biology, 394, 297-305, 2009 [with J. Sun, D.M. Abdeljabbar, N. Clarke, M.L. Bellows and A.J. Link].
  20. "Evaluation of synergy effect in the horizontal merger of companies in a petrochemical complex." Industrial & Engineering Chemistry Research, 48, 11017-11033, 2009 [with S.G. Yoon, S. Park, J. Lee and P. Verderame].
  21. "Unit-Specific Event-based Continuous-Time Approach for Short-Term Scheduling of Batch Plants using RTN Framework." Computers & Chemical Engineering, 32, 260-274 2008 [with M.A Shaik].
  22. "A Path Selection Approach to Global Pairwise Sequence Alignment Using Integer Linear Optimization." Optimization, 57, 101-111, 2008 [with S.R. McAllister, and R. Rajgaria].
  23. "Improving Unit-Specific Event Based Continuous-Time Approaches for Batch Processes: Integrality Gap and Task Splitting." Computers & Chemical Engineering, 32, 913-955, 2008 [with S.L. Janak].
  24. "Convex Underestimation for Sums of Posynomial and Linear Functions of Positive Variables." Optimization Letters, 2, 333-340, 2008 [with H.-L.Li, and J.-F.Tsai].
  25. "Unit-Specific Event-based Continuous-Time Approach for Short-Term Scheduling of Batch Plants using RTN Framework." Computers & Chemical Engineering, 32, 260-274 2008 [with M.A. Shaik].
  26. "Distance Dependent Centroid to Centroid Force Fields Using High Resolution Decoys." Proteins, 70, pp.950-970, 2008 [with R. Rajgaria and S.R. McAllister].
  27. "Tight Convex Underestimators for C2-Continuous Problems: I. Univariate Functions." J. Global Optimization, 42, 51-67, 2008 [with C.E. Gounaris].
  28. "Tight Convex Underestimators for C2-Continuous Problems: II. Multivariate Functions." J. Global Optimization, 42, 69-89, 2008 [with C.E. Gounaris].
  29. "Computational De Novo Peptide and Protein Design: Rigid Templates versus Flexible Templates." Industrial Engineering Chemistry Research, 47, 993-1001,2008 [with H. K. Fung and W. J. Welsh].
  30. "Towards Full Sequence De Novo Protein Design with Flexible Templates for Human Beta-Defensin-2." Biophysical J., 94, pp. 584-599, 2008 [with H.K. Fung, M.S. Taylor, L. Zhang and D. Morikis].
  31. "Convexity of Products of Univariate Functions and Convexification Transformations for Geometric Programming." J. Optimization, Theory and Its Applications, JOTA, 138, 3, 407-427, 2008 [with C.E. Gounaris].
  32. "Biclustering via Optimal Re-ordering of Data Matrices in Systems Biology: Rigorous methods and comparative studies." BMC Bioinformatics, 9, 458 (2008) (highly accessed). [with P.A. DiMaggio, S.R. McAllister, X.J. Feng, J.D. Rabinowitz, and H.A. Rabitz].
  33. "Descriptor-free molecular discovery in large libraries by adaptive substituent reordering." Bioorganic & Medicinal Chemistry Letters, 18, 5967-5970, 2008 [with S.R. McAllister, X.J. Feng, P.A. DiMaggio, J.D. Rabinowitz, and H.A. Rabitz].
  34. [with S.G. Yoon, S.B. Park, S. Park, J. Lee, and P.M. Verderame]. "Synergy in Mergers of Petrochemical Companies within a Complex Considering Purchasing and Selling Advantage." Industrial Engineering Chemistry Research, 47, 5556-5567, 2008
  35. "Mutations Affecting the Oligomerization Interface of G-Protein Coupled Receptors Revealed by a Novel De Novo Protein Design Framework." Biophysical J., 94, 2470-2481, 2008 [with M.S. Taylor, H.K. Fung, R. Rajgaria, M. Filizola, and H. Weinstein].
  36. "A Hybrid Method for Peptide Identification using Integer Linear Optimization, Local Database Search and QTOF or OrbiTrap Tandem Mass Spectrometry." J. Proteome Research, 7, 1584-1593, 2008 [with P.A. DiMaggio, B. Lu, and J.R. Yates].
  37. "Optimal Methods for Re-ordering Matrices in Systems Biology and Drug Discovery Applications." Biophysical Reviews and Letters, 3, 19-42, 2008 [with P.A. DiMaggio, S.R. McAllister, X.J. Feng, J.D. Rabinowitz, and H.A. Rabitz].
  38. "Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures." BMC Bioinformatics, 9, 268-283, 2008 (highly accessed). [with M.P. Tan, E.R. Smith and J.R. Broach].
  39. "Integrated Operational Planning and Medium-Term Scheduling of a Large-Scale Industrial Batch Plants." Industrial Engineering Chemistry Research, 47, 4845-4860 2008 [with P.M. Verderame].
  40. "Alpha-Helical Topology Prediction and Generation of Distance Restraints in Membrane Proteins." Biophysical Journal, 95, 11, 5281-5295, 2008 [with S.R. McAllister].
  41. “A New Robust Optimization Approach for Scheduling under Uncertainty: II. Uncertainty with Known Probability Distribution.” Comp. Chem. Eng., 31, 171, 2007 [with S.L. Janak and X. Lin].
  42. “Global Pairwise Sequence Alignment Through Mixed-Integer Linear Programming: A Template-Free Approach.” Optim. Methods Softw, 22, 127, 2007 [with S.R. McAllister and R. Rajgaria].
  43. “Novel Formulations for the Sequence Selection Problem in de Novo Protein Design with Flexible Templates.” Optim. Methods .Softw., 22, 51, 2007 [with H.K. Fung and M.S. Taylor].
  44. “A Template-Based Mixed-Integer Linear Programming Sequence Alignment Model.” Chapter in Models and Algorithms for Global Optimization, Eds. A. Torn and J. Zilinskas, Springer, pp. 343, 2007 [with S.R. McAllister and R. Rajgaria].
  45. “Towards Optimal Techniques for Solving Global Optimization Problems: Symmetry-based Approach.” Chapter in Models and Algorithms for Global Optimization, Eds. A. Torn and J. Zilinskas, Springer, 21, 2007 [with V. Kreinovich].
  46. “On the Functional Form of Convex Underestimators for Twice Continuously Differentiable Functions.” Optimization Letters, 1, 187, 2007 [with V. Kreinovich].
  47. “A Mixed-Integer Optimization Framework for De Novo Peptide Identification.” AIChE J., 53, 160, 2007 [with P.A. DiMaggio].
  48. “Improved Unit-specific Event-Based Continuous-Time Model for Short-Term Scheduling of continuous Processes: Rigorous Treatment of Storage Requirements.” Ind. Eng. Chem. Res., 46, 1764, 2007 [with M.A. Shaik].
  49. “De Novo Peptide Identification via Tandem Mass Spectrometry and Integer Linear Optimization.” Analytical Chemistry, 79, 1433, 2007 [with P.A. DiMaggio].
  50. “Computational Methods in Protein Structure Prediction.” Biotech. Bioeng., 97, 207, 2007.
  51. “A Novel Clustering Approach and Prediction of Optimal Number of Clusters: Global Optimum Search with Enhanced Positioning.” J. Global Optim., 39, 323, 2007 [with M.P. Tan and J.R. Broach].
  52. “Systems Analysis, Optimization and Data Mining in Biomedicine – Preface.” Optim. Methods Softw., 22, 1, 2007 [with O.A. Prokepyev].
  53. "A Novel Approach for Alpha-Helical Topology Prediction in Globular Proteins: Generation of Interhelical Restraints.” Proteins, 65, 930-952, 2006 [with S.R. McAllister, B.E. Mickus, J.L. Klepeis].
  54. “Advances in Protein Structure Prediction and De Novo Protein Design: A Review.” Chem. Eng. Sci., 61, 966, 2006 [with H.K. Fung, S.R. McAllister, M. Mönnigmann and R. Rajgaria].
  55. “Mathematical Modeling and Optimization Methods for De Novo Protein Design.” Systems Biology, Volume II: Networks, Models, and Applications. Eds. I. Rigoutsos and G. Stephanopoulos, Springer, pp 42-66, 2006 [with H.K. Fung].
  56. “Global Optimization of a Combinatorially Complex Generalized Pooling Problem.” AIChE J., 52, 1027, 2006 [with C.A. Meyer].
  57. “Novel and Effective Integer Optimization Approach for the NSF Panel-Assignment Problem: A Multiresource and Preference-Constrained Generalized Assignment Problem.” Ind. Eng. Chem. Res., 45, 258., 2006 [with S.L. Janak, M.S. Taylor, M. Burka and T.J. Mountziaris].
  58. “Structure Prediction of Alpha-Helical Proteins.” Proceedings of the International Symposium on Mathematical and Computational Biology, BIOMAT V, Eds. R.P. Mondaini and R. Dilao, 265-288, 2006 [with S.R. McAllister].
  59. “Production Scheduling of a Large-Scale Industrial Batch Plant. I. Short-Term and Medium-Term Scheduling.” Industrial Engineering Chemistry Research, 45, 8234-8252, 2006 [with S.L. Janak, J. Kallrath and N. Vormbrock].
  60. “Production Scheduling of a Large-Scale Industrial Batch Plant. II. Reactive Scheduling.” Ind. Eng. Chem. Res., 45, 8253, 2006 [S.L. Janak, J. Kallrath and N. Vormbrock].
  61. “On the Functional Form of Convex Underestimators for Twice Continuously Differentiable Functions.” Optim. Lett., 1, 1, 2006 [with V. Kreinovich]
  62. “Continuous-Time Models for Short-Term Scheduling of Multipurpose Batch Plants: A Comparative Study.” Ind. Eng. Chem. Res., 45, 6190, 2006 [with M.A. Shaik and S.L. Janak].
  63. “A Novel High Resolution Cα-Cα Distance Dependent Force Field Based on a High Quality Decoy Set.” Proteins, 65, 726, 2006 [with R. Rajgaria and S.R. McAllister].
  64. “Rational Design of Shape Selective Separation and Catalysis: I. Concepts and Analysis.” Chem. Eng. Sci., 61, 7933, 2006 [with C.E. Gounaris and J. Wei].
  65. “Rational Design of Shape Selective Separation and Catalysis: II. Mathematical Model and Computational Studies.” Chem. Eng. Sci., 61, 7949, 2006 [with C.E. Gounaris and J. Wei].
  66. "Mixed Integer Linear Programming in Process Scheduling: Modeling, Algorithms, and Applications." Annals Oper. Res.,, 139, 131, 2005 [with X. Lin].
  67. “Global Optimization: Local Minima and Transition Points.” J. Global Optim., 32, 409, 2005 [with H.Th. Jongen]
  68. “Global Optimization of Mixed-Integer Bilevel Programming Problems.” Comput. Manage. Sci., 2, 181, 2005 [with Z.H. Gümüs]
  69. “Convex Envelopes for Edge-Concave Functions.” Math. Prog., 103, 207, 2005 [with C.A. Meyer]
  70. "Ab Initio Prediction of the Three-Dimensional Structure of a De Novo Designed Protein: A Double-Blind Case Study." Proteins, 58, 560, 2005 [with J.L. Klepeis, Y.N. Wei and M.H. Hecht].
  71. “Convex Underestimation of Twice Continuously Differentiable Functions by Piecewise Quadratic Perturbation: Spline αBB Underestimatiors.” J. Global Optim., 32, 221, 2005 [with C.A. Meyer].
  72. “Analysis and Prediction of Loop Segments in Protein Structures.” Comp. Chem. Eng., 29, 423, 2005 [with J.L. Klepeis].
  73. “Global Optimization in the 21st Century: Advances and Challenges.” Comp. Chem. Eng., 29, 1185, 2005 [with I.G. Akrotirianakis, S. Caratzoulas, C.A. Meyer and J. Kallrath].
  74. "Comments on "New General Continuous-Time State-Task Network Formulation for Short-Term Scheduling of Multipurpose Batch Plants" by Christos T. Maravelias and Ignacio E. Grossmann and on "Enhanced Continuous-Time Unit-Specific Event-Based Formulation for Short-Term Scheduling of Multipurpose Batch Processes: Resource Constraints and Mixed Storage Policies" by Stacy L. Janak, Xiaoxia Lin, and Christodoulos A. Floudas." Ind. Eng. Chem. Res., 44, 1985-1986, 2005 [with S.L. Janak].
  75. “Computational Comparison Studies of Quadratic Assignment Like Formulations for the In Silico Sequence Selection Problem in De Novo Protein Design.” J. Comb. Optim., 10, 41, 2005 [with H.K. Fung, S. Rao, O. Prokopyev, P.M. Pardalos and F. Rendl].
  76. “Protein Loop Structure Prediction with Flexible Stem Geometries.” Proteins, 61, 748, 2005 [with M. Mönnigmann].
  77. “Research Challenges, Opportunities and Synergism in Systems Engineering and Computational Biology.” AIChE J., 51, 1872, 2005.
  78. “Structure-Based Integrative Computational and Experimental Approach for the Optimization of Drug Design.” Lecture Notes in Computer Science, 3515, 680, 2005 [with D. Morikis and J.D. Lambris].
  79. "Enhanced Continuous-Time Unit-Specific Event-Based Formulation for Short-Term Scheduling of Multipurpose Batch Processes: Resource Constraints and Mixed Storage Policies (Vol 43, Pg 2529, 2002)." Industrial & Engineering Chemistry Research, 44, 426-426, 2005 [with S.L. Janak and X.X. Lin].
  80. Frontiers in Global Optimization. Kluwer Academic Publishers, 2004 [edited with P.M. Pardalos].
  81. “In Silico Protein Design: A Combinatorial and Global Optimization Approach.” SIAM News, 37, 1, 2004 [with J.L. Klepeis]
  82. "Computational Experience with a New Class of Convex Underestimators: Box-constrained NLP Problems." J Global Optim., 29, 249, 2004 [with I.G. Akrotirianakis].
  83. "Trigonometric Convex Underestimator for the Base Functions in Fourier Space." J. Optim. Theory Appl., 124, 339, 2004 [with S. Caratzoulas].
  84. “Predicting Peptide Binding to MHC Pockets via Molecular Modeling, Implicit Solvation, and Global Optimization.” Proteins, 54, 534, 2004 [with H.D. Schafroth].
  85. “Preface.” J. Global Optim., 29, 247, 2004 [with P.M. Pardalos].
  86. “Improvement of the Anti-C3 Activity of Compstatin Using Rational and Combinatorial Approaches.” Biochem. Soc. Trans., 32, 28, 2004 [with D. Morikis, A.M. Soulika, B. Mallik, J.L. Klepeis, and J.D. Lambris].
  87. “Trilinear Monomials with Mixed Sign Domains: Facets of the Convex and Concave Envelopes.” J. Global Optim., 29, 125, 2004 [with C.A. Meyer].
  88. “A New Pairwise Folding Potential Based on Improved Decoy Generation and Side-Chain Packing.” Proteins, 54, 303, 2004 [with C. Loose and J.L. Klepeis].
  89. “A New Robust Optimization Approach for Scheduling under Uncertainty: I. Bounded Uncertainty.” Comp. Chem. Eng., 28, 1069, 2004 [with X.X. Lin and S.L. Janak].
  90. “Design of Peptide Analogues with Improves Activity Using a Novel de Novo Protein Design Approach.” Ind. Eng. Chem. Res., 43, 3817, 2004 [with J.L. Klepeis, D. Morikis, C.G. Tsokos, and J.D. Lambris].
  91. “Enhanced Continuous-Time Unit-Specific Event-Based Formulation for Short-Term Scheduling of Multipurpose Batch Processes: Resource Constraints and Mixed Storage Policies.” Ind. Eng. Chem. Res., 43, 2516, 2004 [with S.L. Janak and X.X. Lin].
  92. “Continuous-Time Versus Discrete-Time Approaches for Scheduling of Chemical Processes: A Review.” Comp. Chem. Eng., 28, 2109, 2004 [with X.X. Lin]
  93. “A New Class of Improved Convex Underestimators for Twice Continuously Differentiable Constrained NLPs.” J. Global Optim., 30, 367, 2004 [with I.G. Akrotirianakis].
  94. “Methods of Ab Initio Prediction of Alpha Helices, Beta Sheets, and Polypeptide Tertiary Structures.” U.S. Patent #6,832,162, December 14, 2004 [with J.L. Klepeis].
  95. “A Novel Continuous-Time Modeling and Optimization Framework for Well Platform Planning Problems.” Optim. Eng., 4, 65, 2003 [with X. Lin}
  96. “Theoretical and Computational Studies of the Glucose Signaling Pathways in Yeast Using Global Gene Expression Data.” Biotech. Bioengr., 84, 864, 2003 [with X.X. Lin, Y. Wang, and J.R. Broach].
  97. “Scheduling of Tanker Lightering via a Novel Continuous-Time Optimization Framework.” Ind. Eng. Chem. Res., 42, 4441, 2003 [with X.X. Lin and E.D. Chajakis].
  98. “Hybrid Global Optimization Algorithms for Protein Structure Prediction: Alternating Hybrids.” Biophys. J., 84, 869, 2003 [with J.L. Klepeis and M.J. Pieja].
  99. “A New Class of Hybrid Global Optimization Algorithms for Peptide Structure Prediction: Integrated Hybrids.” Comp. Phys. Comm., 151, 121, 2003 [with J.L. Klepeis and M. Pieja].
  100. “Integrated Computational and Experimental Approach for Lead Optimization and Design of Compstatin Variants with Improved Activity.” J. Am. Chem. Soc., 125, 8422, 2003 [with J.L. Klepeis, D. Morikis, C.G. Tsokos, E. Argyropoulos, L. Spruce, and J.D. Lambris].
  101. “Prediction of Beta-Sheet Topology and Disulfide Bridges in Polypeptides.” J. Comp. Chem., 24, 191, 2003 [with J.L. Klepeis].
  102. “ASTRO-FOLD: A Combinatorial and Global Optimization Framework for Ab Initio Prediction of Three-Dimensional Structures of Proteins from the Amino Acid Sequence.” Biophys. J., 85, 2119, 2003 [with J.L. Klepeis].
  103. “Ab Initio Tertiary Structure Prediction of Proteins.” J. Global Optim., 25, 113, 2003 [with J.L. Klepeis].
  104. “Deterministic Global Optimization in Isothermal Reactor Network Synthesis.” J. Global Optim., 22, 59, 2002 [with W.R. Esposito].
  105. “Optimization of Polymer Synthesis Through Distributed Control of Polymerization Conditions.” J. Appl. Poly. Sci., 85, 2922, 2002 [with A. Faliks, R.A. Yetter, Y. Wei, and H. Rabitz].
  106. “Continuous-Time Optimization Approach for Medium-Range Production Scheduling of a Multiproduct Batch Plant.” Ind. Eng. Chem. Res., 41, 3884, 2002 [with X. Lin, S. Modi, and N.M. Juhasz].
  107. “ASTRO-FOLD: Ab Initio Secondary and Tertiary Structure Prediction in Protein Folding.” In European Symposium on Computer Aided Process Engineering – 12, Elsevier, 2002 [with J.L. Klepeis].
  108. “Predicting Peptide Binding to HLA Class II Molecules via Atomistic Level Modeling, Solvation Methods, and Deterministric Global Optimization.” Tissue Antigens, 59, 25, 2002 [with H.D. Schafroth, D. Monos, and A. Constantinescou].
  109. “Global Optimization with Non-Factorable Constraints.” Ind. Eng. Chem. Res., 25, 6413, 2002 [with C.A. Meyer and A. Neumaier].
  110. Encyclopedia of Optimization. Kluwer Academic Publishers, 2001 [edited with P.M. Pardalos].
  111. “Mixed-Integer Nonlinear Optimization.” In Handbook of Applied Optimization, M. Resende and P.M. Pardalos, eds., Oxford University Press, 451, 2001.
  112. “Deterministic Global Optimization and Its Applications.” In Handbook of Applied Optimization, M. Resende and P.M. Pardalos, eds., 311, 2001.
  113. “Deterministic Global Optimization and Ab Initio Approaches for the Structure Prediction of Polypeptides, Dynamics of Protein Folding and Protein-Protein Interactions.” Adv. Chem. Phys., 120, 266, 2001 [with J.L. Klepeis, H.D. Schafroth, and K.M. Westerberg].
  114. “Deterministic Global Optimization for Protein Structure Prediction.” Book in Honor of C. Caratheodory, N. Hadjisavvas and P.M. Pardalos, eds., 31, 2001 [with J.L. Klepeis].
  115. “Global Optimization of Nonlinear Bilevel Programming Problems.” J. Global Optim., 20, 1, 2001 [with Z.H. Gumus].
  116. “Global Optimization in Design Under Uncertainty: Feasibility Test and Flexibility Index Problems.” Ind. Eng. Chem. Res., 40, 4267, 2001 [with Z.H. Gumus and M.G. Ierapetritou].
  117. “Design, Synthesis and Scheduling of Multipurpose Batch Plants via an Effective Continuous-Time Formulation.” Comp. Chem. Eng., 25, 665, 2001 [with X. Lin].
  118. “Comments on Global Optimization for the Parameter Estimation of Differential Algebraic Systems.” Ind. Eng. Chem. Res., 40, 490, 2001 [with W.R. Esposito].
  119. “Optimal Control of Methane Conversion to Ethylene.” J. Phys. Chem. A, 104, 10740, 2001 [with A. Faliks, R.A. Yetter, R. Hall, and H. Rabitz].
  120. “Optimization of Living Polymerization Through Distributed Control of a Nitroxide Radical.” Polymer, 42, 2061, 2001 [with A. Faliks, R.A. Yetter, Y.Wei, and H. Rabitz].
  121. “Optimal Control of Catalytic Methanol Conversion to Formaldehyde.” J. Phys. Chem. A, 105, 2099, 2001 [with A. Faliks, R.A. Yetter, S.L. Bernasek, M. Fransson, and H. Rabitz].
  122. “Comments on ‘An Improved RTN Continuous-Time Formulation for the Short-term Scheduling of Multipurpose Batch Plants’.” Ind. Eng. Chem. Res., 40, 5040, 2001 [with M.G. Ierapetritou].
  123. “Optimization of Living Radical Polymerization Through Distributed Control of Energy.” Macromol. Chem. Phys., 202, 2797, 2001 [with A. Faliks, R.A. Yetter, Y. Wei, and H. Rabitz].
  124. “Ab Initio Prediction of Helical Segments in Polypeptides.” J. Comput. Chem., 23, 245, 2001 [with J.L. Klepeis].
  125. Deterministic Global Optimization: Theory, Algorithms and Applications. Kluwer Academic Publishers, 2000.
  126. Optimization in Computational Chemistry and Molecular Biology: Local and Global Approaches. Kluwer Academic Publishers, 2000 [edited with P.M. Pardalos].
  127. “Global Optimization of Mixed Integer Nonlinear Problems.” AIChE J., 46, 1769, 2000 [with C.S. Adjiman and I.P. Androulakis].
  128. “Phase Stability With Cubic Equations of State: A Global Optimization Approach.” AIChE J., 46, 1422, 2000 [with S.T. Harding].
  129. “Locating Heterogeneous and Reactive Azeotropes.” Ind. Eng. Chem. Res., 39, 1576, 2000 [with S.T. Harding].
  130. “Global Optimization in Parameter Estimation of Differential Algebraic Models.” Ind. Eng. Chem. Res., 39, 1291, 2000 [with W.R. Esposito].
  131. “Deterministic Global Optimization in Optimal Control Problems.” J. Global Optim., 17, 97, 2000 [with W.R. Esposito].
  132. “Deterministic Global Optimization and Torsion Angle Dynamics for Molecular Structure Prediction.” Comp. Chem. Engr., 24, 1761, 2000 [with J.L. Klepeis].
  133. “Global Optimization in Design and Control of Chemical Process Systems.” J. Process Control, 10, 125, 2000.
  134. “Adaptive Feedback Control Flow Reactor.” U.S. Patent #6,153,149, November 28, 2000 [with H.A. Rabitz and R.A. Yetter].
  135. Handbook of Test Problems for Local and Global Optimization. Kluwer Academic Publishers, 1999 [with P.M. Pardalos, C.S. Adjiman, W.R. Esposito, Z. Gumus, S.T. Harding, J.L. Klepeis, C.A. Meyer, and C.A. Schweiger].
  136. Nonlinear and Mixed-lnteger Optimization: Fundamentals and Applications. Oxford University Press, New York, NY., 1995.
  137. A Collection of Test Problems for Constrained Global Optimization Algorithms. Lecture Notes in Computer Science, Vol. 455, Springer-Verlag Publishers, 1990 [with P.M. Pardalos].