Publications
Amato SM, Orman MA, Brynildsen MP. Metabolic control of persister formation in Escherichia coli. Mol Cell, 2013 May 23; 50: 1-13.
http://www.cell.com/molecular-cell/abstract/S1097-2765(13)00283-9
Robinson JL, Brynildsen MP. A kinetic platform to determine the fate of nitric oxide in Escherichia coli. PLoS Comp Biol, 2013 May 2; 9(5).
http://www.ncbi.nlm.nih.gov/pubmed/23658508
Orman MA, Brynildsen MP. Dormancy is not necessary or sufficient for bacterial persistence. Antimicrob Agents Chemother, 2013 Apr 29 [epub ahead of print].
http://www.ncbi.nlm.nih.gov/pubmed/23629720
Brynildsen MP, Winkler JA, Spina CS, MacDonald IC, Collins JJ. Potentiating antibacterial activity by predictably enhancing endogenous microbial ROS production. Nature Biotech, 2013 Feb;31(2):160-5.
http://www.ncbi.nlm.nih.gov/pubmed/23292609
Allison KR, Brynildsen MP, Collins JJ. Heterogeneous bacterial persisters and engineering approaches to eliminate them. Curr Opin Microbiol. 2011 Oct;14(5):593-8.
http://www.ncbi.nlm.nih.gov/pubmed/21937262
Allison KR, Brynildsen MP, Collins JJ. Metabolite-enabled eradication of bacterial persisters by aminoglycosides. Nature, 2011 May 12; 473(7346):216-20.
http://www.ncbi.nlm.nih.gov/pubmed/21562562
Brynildsen MP, Liao JC. An integrated network approach identifies the isobutanol response network of Escherichia coli. Mol Syst Biol., 2009; 5:277.
http://www.ncbi.nlm.nih.gov/pubmed/19536200
Brynildsen MP, Collins JJ. Systems biology makes it personal. Mol Cell., 2009 Apr 24;34(2):137-8.
http://www.ncbi.nlm.nih.gov/pubmed/19394290
Atsumi S, Cann AF, Connor MR, Shen CR, Smith KM, Brynildsen MP, Chou KJ, Hanai T, Liao JC. Metabolic engineering of Escherichia coli for 1-butanol production. Metab Eng, 2008 Nov;10(6):305-11.
http://www.ncbi.nlm.nih.gov/pubmed/17942358
Brynildsen MP, Wu TY, Jang SS, Liao JC. Biological network mapping and source signal deduction. Bioinformatics, 2007 Jul 15;23(14):1783-91.
http://www.ncbi.nlm.nih.gov/pubmed/17495996
Brynildsen MP, Tran LM, Liao JC. A Gibbs sampler for the identification of gene expression and network connectivity consistency. Bioinformatics, 2006 Dec 15;22(24):3040-6.
http://www.ncbi.nlm.nih.gov/pubmed/17060361
Brynildsen MP, Tran LM, Liao JC. Versatility and connectivity efficiency of bipartite transcription networks. Biophys J, 2006 Oct 15;91(8):2749-59.
http://www.ncbi.nlm.nih.gov/pubmed/16815895
Brynildsen MP, Wong WW, Liao JC. Transcriptional regulation and metabolism. Biochem Soc Trans, 2005 Dec;33(Pt 6):1423-6.
http://www.ncbi.nlm.nih.gov/pubmed/16246136
Yang YL, Suen J, Brynildsen MP, Galbraith S, Liao JC. Inferring yeast cell cycle regulators and interactions using transcription factor activities. BMC Genomics, 2005 Jun 10;6(1):90.
http://www.ncbi.nlm.nih.gov/pubmed/15949038
Tran LM, Brynildsen MP, Kao KC, Suen JK, Liao JC. gNCA: A framework for determining transcription factor activity based on transcriptome: Identifiability and numerical implementation. Metab Eng, 2005 Mar;7(2):128-41.
http://www.ncbi.nlm.nih.gov/pubmed/15781421
