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Home » futureofhealth » understanding

Exploring the intersection between engineering and health

  • Preventing
  • Diagnosing
  • Treating
  • Understanding
Mind reading: Engineers help reveal meaning in brain scans
by Steven Schultz

Researchers in brain imaging lab


Princeton engineers are working closely with neuroscientists to understand how visual information and words are encoded in the brain.


In a five-year collaboration, a team led by Princeton’s Peter Ramadge, chair and the Gordon Y.S. Wu Professor of electrical engineering, and James Haxby, a neuroscientist at Dartmouth College, have found common patterns in data from brain scans, called fMRI, that reveal brain activity as people perform tasks. The researchers are solving a long-standing challenge of comparing one person’s brain activity to another, which until now has been difficult because both the anatomy and functional processes of each person’s brain are different.


In one recent result, published in the journal Neuron, the researchers had subjects watch the entire movie “Raiders of the Lost Ark” while undergoing fMRI scans and used the data to derive a “common neural code” for how the brain recognizes complex visual images. Based on data from the first half of the movie, the researchers were able to predict, using only a person’s fMRI results, what scene he or she was watching in the second half of the movie.


Ramadge said the collaboration has not only revealed deep insights for neuroscience but has pushed the limits of the engineering techniques in ways that could be useful in many other areas. “It’s been a two-way street,” he said.


Ramadge attributed the success in part to weekly interdisciplinary meetings initiated by Jonathan Cohen, the Eugene Higgins Professor of Psychology and co-director of the Princeton Neuroscience Institute.


“It’s been a great way for my students and me to learn the language of neuroscience,” Ramadge said.


In a separate project, computer scientist David Blei and neuroscientist Ken Norman also are using fMRI data to understand how word meanings are represented in the brain and how these meanings shape memory retrieval. The researchers are showing how the meanings of words that were presented recently can linger in the brain and serve as a mental context that time-stamps memories, so that memories evoke words and vice versa. The work may aid the development of technologies for diagnosing and remediating memory problems.

Original thinking: Probing early growth may reveal new paths to treatment
by Steven Schultz

Microscope image of lung tissue


Biologists have long been fascinated by the first moments when cells divide to become complex tissues and organisms. Now engineers — with an eye toward treating cancer and regenerating tissue — are increasingly joining the hunt for the quantitative principles and underlying mathematics that determine how these processes succeed or fail.


Stanislav Shvartsman Ph.D. ’99, a professor of chemical and biological engineering who also holds an appointment in Princeton’s Lewis Sigler Institute for Integrative Genomics, is developing statistical approaches to understanding the way chemicals spread signals across an embryo. Shvartsman and colleagues published a breakthrough in this work Oct. 17 in the journal Development.


In the lab of Celeste Nelson, assistant professor of chemical and biological engineering, Cecillia Lui ’11 recently turned her senior thesis into a peer-reviewed article on the mechanics of stem-cell differentiation in breast tissue, which could have implications for understanding breast cancer. Another former undergraduate, Jay Kwak ’09, is co-author with Nelson of a new study revealing that normal lung-tissue development is governed by a single mathematical equation.


In the same department, Assistant Professor Clifford Brangwynne focuses on a cell component called the nucleolus, a loose confederation of proteins and RNA that produces the hardware that builds cells from the inside out. A long-term goal is to tune the properties of this tiny bioreactor to adjust cell growth, which could be useful in battling the runaway expansion that characterizes cancer.

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In brief: Understanding biology and disease
by Steven Schultz

Student in labFundamentals of fluids


Researchers in the lab of Howard Stone, the Donald R. Dixon ’69 and Elizabeth W. Dixon Professor of Mechanical and Aerospace Engineering, are applying a deep understanding of fluid flows to reveal the mechanics behind critical biological functions.


In one project, Stone’s group found the unexpected formation of bacterial ribbons in the middle of flowing fluids, which has implications for understanding serious infections and has led to a collaboration with Bonnie Bassler, the Squibb Professor of Molecular Biology, and Ned Wingreen, a professor of molecular biology and associate director of the Lewis-Sigler Institute for Integrative Genomics.


Click here to learn about Stone’s work in a video by international science photographer Volker Steger


Assembling the genetic “human-in-a-blender”


The field of biology is awash in data about human genes, but as Olga Troyanskaya points out, databases often represent a “human-in-a-blender” — an undifferentiated average of genetic activity throughout the body.


Troyanskaya, an associate professor of computer science who is jointly appointed at Princeton’s Lewis- Sigler Institute for Integrative Genomics, is developing computational methods to determine exactly what genes are turned on or off in specific tissues — whether the kidneys or the lungs — without doing any further laboratory experiments.


“It is very accurate — more accurate than experimental approaches in mice,” Troyanskaya said.


The next step in her work is to develop a similar method for elucidating the pathway of signals from one gene product to another, bypassing the need for timeconsuming experiments and offering clues to disease processes and therapies.


Technology, policy and medical research


Information technology is transforming biomedical research by creating formalized networking platforms through which researchers share knowledge. Benedicte Callan, a University of Texas health-policy expert currently a visiting fellow at Princeton’s Center for Information Technology Policy, is studying these networks and how might they affect government policy toward funding, openness and commercialization of biomedical research.


Professor and student in labEvolution of cancer


James Sturm, the William and Edna Macaleer Professor of Engineering and Applied Science, and director of the Princeton Institute for the Science and Technology of Materials, is working with physics professor Robert Austin, of the Princeton Physical Sciences Oncology Center, on an interdisciplinary approach to understanding the evolution of cancer.


In one project, Sturm and colleagues created an array of tiny posts that hold cancer cells and allow precise control over their microenvironment. The researchers use the device to wash cancer drugs over the cells and watch how the cells develop resistance to the drugs.


Simulating brain damage


Researchers in the lab of Professor of Electrical Engineering Sigurd Wagner are using their expertise in flexible electronics to give medical researchers an unprecedented view of brain damage.


Photos of unstretched and stretched membranesDoctors would like to model brain damage in the lab by rapidly stretching nerve cells, but the electronics needed to monitor the effects typically are mounted on glass, which does not stretch. Wagner’s group, including graduate student Wenzhe Cao, has developed a flexible electronic array and is testing it with biomedical engineers at Columbia University.


Brain tissue cultures grown on this flexible material can be stretched to model traumatic injury, and the tissue's electrophysiology can be monitored before, during and after stretching.

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