Princeton University -- Mechanical & Aerospace Engineering -- Recent Papers

Skip over navigation

PEOPLE
Overview
Faculty Directory
- Arnold
- Bracco
- Brown
- Carter
- Choueiri
- Curtiss
- Dryer
- Glassman
- Glaser
- Haataja
- Holmes
  - Lectures
  - Recent Papers
- Jahn
- Ju
- Kasdin
- Lam
- Law
- Leonard
- Littman
- Martin
- Martinelli
- McAlpine
- Miles
- Nosenchuck
- Rowley
- Royce
- Scully
- Smits
- Soboyejo
- Socolow
- Stengel
- Stone
- Suckewer
Professional Staff
Technical Staff
Administrative Staff
Graduate Students
Editing Site

Recent Papers and Current Reprints

E. Brown, J. Moehlis and P. Holmes (2004) Neural Computation 16 (4): 673-715. On phase reduction and response dynamics of neural oscillator populations.
R. Goodman, P. Holmes, and M.I. Weinstein (2004) Physica D192 (3/4): 215-248. Strong NLS soliton-defect interactions.
E. Brown, J. Moehlis, P. Holmes, E. Clayton, J. Rajkowski and G. Aston-Jones (2004). J. Comp. Neurosci. 17 (1): 5-21.The influence of spike rate and stimulus duration on brainstem noradrenergic neurons.
R. Altendorfer, D. Koditschek and P. Holmes (2004) Int. J. Robotics Research 23 (10-11),�979-999. Stability analyisis of legged locomotion by symmetry-factored return maps.
R. Altendorfer, D. Koditschek and P. Holmes (2004) Int. J. Robotics Research 23 (10-11), 1001-1012. Stability analyisis of a clock-driven rigid-body SLIP model of RHex.
J. Seipel, P. Holmes and R.J. Full (2004) Biological Cybern., 91: 76-90. Dynamics and stability of insect locomotion: A hexapedal model for horizontal plane motions.
R. Ghigliazza and P. Holmes (2004) SIAM J. on Applied Dynamical Systems�3 (4), 636-670. Minimal models of bursting neurons: How multiple currents, conductances and timescales affect bifurcation diagrams.
Raffaele M. Ghigliazza (2004) Ph.D. Dissertation, Neuromechanical models for insect locomotion.
R. Ghigliazza and P. Holmes (2004) SIAM J. on Applied Dynamical Systems 3 (4), 671-700. A minimal model of a central pattern generator and motoneurons for insect locomotion.
T.R. Smith, J. Moehlis and P. Holmes (2005) J. Fluid Mech. 538, 71-110. Low-dimensional models for turbulent plane Couette flow in a minimal flow unit.
T.R. Smith, J. Moehlis and P. Holmes (2005) Nonlinear Dynamics 41, 275-307. Low-dimensional modelling of turbulence using the proper orthogonal decomposition: A tutorial.
J.E. Seipel and P. Holmes (2005)� Int. J. Robotics Research 24 (8), 657-674. Running in three dimensions: analysis of a point-mass sprung-leg model.
T.R. Smith, J. Moehlis and P. Holmes (2005)� Physica D211, 347-376. Dynamics of an 0:1:2 0(2)-equivarant system: Heteroclinic cycles and periodic orbits.
R. Ghigliazza and P. Holmes (2005) Regular and Chaotic Dynamics 10 (2), 193-225. Towards a neuromechanical model for insect locomotion: Hybrid dynamical systems.
R. M. Ghigliazza, R. Altendorfer, P. Holmes and D. Koditschek (2005) SIAM Review 47 (3), 519-549. A simply stabilized running model.
P. Holmes (2005) Int. J. Bifurcation and Chaos 15(9), 2703-2716. Ninety plus thirty years of nonlinear dynamics: More is different and less is more.
E. Brown, J. Gao, P. Holmes, R. Bogacz, M. Gilzenrat and J.D. Cohen (2005) Int. Jour. Bifurcation and Chaos 15 (3), 803-826.� Simple neural networks that optimize decisions.
R. Bogacz, E. Brown, J. Moehlis,�P. Holmes and J.D. Cohen (2006) Psychological Review 113 (4), 700-765. The physics of optimal decision making: A formal analysis of models of performance in two-alternative forced choice tasks.
P. Holmes, R.J.Full, D. Koditschek and J. Guckenheimer�(2006) SIAM Review 48 (2), 207-304. Dynamics of legged locomotion: Models, analyses and challenges.
T. McMillen and P. Holmes (2006)�J. Math. Psych.�50, 30-57.��The dynamics of choice among multiple alternatives
J. E. Seipel and P.� Holmes (2006) Int. J. Robotics Research 25 (9), 889-902. Three dimensional translational dynamics and stability of multi-legged runners.
T. McMillen and P. Holmes (2006) J. Math. Biol. 53, 843-866.� An elastic rod model for anguilliform swimming.
P.A. Simen, J.D. Cohen and P. Holmes (2006) Neural Networks 19, 1013-1026.� Rapid decision threshold modulation by reward rate in a neural network.
J. Gao and P. Holmes (2007) J. Comp. Neurosci. 22, 39-61. On the dynamics of electrically-coupled neurons with inhibitory synapses.
R. Kukillaya and P. Holmes (2007) Biological Cybernetics Online first:
DOI 10.1007/s00422-007-0180-2}.� A hexapedal jointed-leg model for insect locomotion� in the horizontal plane.
Y. Liu, P. Holmes, and J.D. Cohen (2008) Neural Computation 20 (2), 345-373. A neural network model of the Eriksen task: Reduction, analysis, and data-fitting.
M. Zackenhouse, R. Bogacz, and P. Holmes (2008) (in review).� Robust versus optimal strategies for determing the speed-accuracy tradeoff on two-alternative forced choice tasks.
M. Srinivasan and P. Holmes (2008)�J. Theoretical Biology 255, 1-7.�How well can spring-mass-like telescoping leg models fit multi-pedal locomotion data?
P. Eckhoff, P. Holmes, C. Law, P.M. Connolly and J.I. Gold (2008) New J. of Physics 10, doi: 1367-2630/10/1/015006.On diffusion processes with variable drift rates as models for decision making during learning.
P. Varkonyi, P. Holmes, T. Keimel, K. Hoffman and A.H. Cohen (2008) J. Comp. Neurosci. 25 (2) doi: 10.1007/s10827-008-0076-8. On the derivation and tuning of phase oscillator models for lamprey central pattern generators.
T. McMillen, T.L. Williams and P. Holmes (2008) PLoS Computational Biology 4 (8), doi:10.1371/journal.pcbi.1000157.Nonlinear muscles, passive viscoelasticity and body taper conspire to create neuro-mechanical phase lags in anguilliform swimmers.
�P. Varkonyi and P. Holmes (2008) SIAM J. on Applied Dynamical Systems 7 (3), 766-794}. On synchronization and traveling waves in chains of relaxation oscillators with an application to lamprey CPG.
J. Proctor and P. Holmes (2008) Regular & Chaotic Dynamics 13 (4), 267-282.Steering by transient destabilization in piecewise-holonomic models of legged locomotion.
Y.S. Liu, A.J. Yu, and P. Holmes (2009) Neural Computation� 21 (6), 15220-1553�Dynamical analysis of a Bayesian inference model for the Eriksen task.
�S. Feng, P. Holmes, A. Rorie and W.T. Newsome (2009) PLoS Computational Biology 5 (2), doi:10.1371/journal.pcbi.1000284. Can monkeys choose optimally when faced with noisy stimuli and unequal rewards?
J. Zhang, R. Bogacz and P. Holmes (2009) J. Math. Psych.� A comparison of bounded diffusion models for choice in time controlled tasks.
J.Gao, K-F. Wong-Lin, P. Holmes, P. Simen and J.D. Cohen (2009) Neural Computation (in press). Sequential effects in two-choice reaction time tasks: Decomposition and synthesis of mechanisms.
P. Eckhoff, K-F. Wong-Lin and P. Holmes (2009) J. Neurosci. 29 (13),4301-4311. Optimality and robustness of a biophysical decision-making model under nonepinephrine modulation.
X. Zhou, K-F. Wong-Lin and P. Holmes (2009) Neural Computation 21 (8), 2336-2362. Time-varying perturbations can distinguish among integrate-to-threshold models for perceptual decision-making in reaction time tasks.
J. Gao, G. Schwartz, P. Holmes and M. Berry II (2009) Network: Computation in Neural Systems 20 (2), 106-135. An oscillatory circuit underlying the detection of disruptions in temporally-periodic patterns.
R. Kukillaya, J. Proctor and P. Holmes (2009) CHAOS: An Interdisciplinary Journal of Nonlinear Science 19 (2), 026107.Neuro-mechanical models for insect locomotion: Stability, maneuverability, and proprioceptive feedback.
R. Kukillaya and P. Holmes (2009) J. Theoretical Biology (posted on line 29 Aug 2009). A model for insect locomotion in the horizontal plane: Feedforward activation of fast muscles, stability, and robustness.�

�