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Princeton Publications 

97.Rothbart SB, Lin S, Britton LM, Krajewski K, Keogh MC, Garcia BA, Strahl BD.  Poly-acetylated chromatin signatures are preferred epitopes for site-specific histone H4 acetyl antibodies.  Sci Rep. 2012;2:489. Epub 2012

96.  Leroy G, Chepelev I, Dimaggio PA, Blanco, MA, Zee BM, Zhao K, Garcia BA.  Proteo-Genomic Characterization and Mapping of Nucleosomes Decoded by Brd and HP1 Proteins.  2012, Genome Biology (Accepted)

95. Blanco MA, Leroy G, Khan Z, Alečković M, Zee BM, Garcia BA, Kang Y.  Global secretome analysis identifies novel mediators of bone metastasis.  Cell Res. 2012 Jun 12. doi: 10.1038/cr.2012.89. [Epub ahead of print]

94. Cao XJ, Zee BM, Garcia BA. Heavy methyl-SILAC labeling coupled with liquid chromatography and high-resolution mass spectrometry to study the dynamics of site-specific histone methylation. 2012, Methods Molecular Biology (In Press)

93.  Lee SH, Kalejta RF, Kerry J, Semmes OJ, O’Connor CM, Khan Z, Garcia BA, Shenk T, Murphy E. BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. 2012, PNAS, 109(24):9575-80.

92. Zee BM, Garcia BA.  Validation of protein acetylation by mass spectrometry.  2012, Methods Molecular Biology, (In Press)

91. Lin S, Garcia BA. Examining histone posttranslational modification patterns by high resolution mass spectrometry. 2012, Methods in Enzymology (In Press)

90.  Barber MF, Michishita-Kioi E, Xi Y, Tasselli L, Kioi M, Moqtaderi Z, Tennen RI, Paredes S, Young NL, Chen K, Struhl K, Garcia BA, Gozani O, Li W, Chua KF.  SIRT7 links H3K18 deacetylation to maintenance of oncogenic transformation.  2012, Nature, doi: 10.1038/nature11043. [Epub ahead of print]

89.  Peinado H, Alečković M, Lavotshkin S, Matei I, Costa-Silva B, Moreno-Bueno G, Hergueta-Redondo M, Williams C, García-Santos G, Ghajar CM, Nitadori-Hoshino A, Hoffman C, Badal K, Garcia BA, Callahan MK, Yuan J, Martins VR, Skog J, Kaplan RN, Brady MS, Wolchok JD, Chapman PB, Kang Y, Bromberg J, Lyden D.  Melanoma exosomes educate bone marrow progenitor cells toward a pro-metastatic phenotype through MET.  Nat Med. 2012 May 27. doi: 10.1038/nm.2753. [Epub ahead of print]

88.  Chicas A, Kapoor A, Wang X, Aksoy O, Evertts AG, Zhang MQ, Garcia BA, Bernstein E, Lowe SW.  H3K4 demethylation by Jarid1a and Jarid1b contributes to retinoblastoma-mediated gene silencing during cellular senescence.  Proc Natl Acad Sci U S A.  2012,109(23):8971-6.

87. Zee, B.M., Britton, L.M., Wolle, D., Haberman, D., Garcia, B.A. Origins and Formation of Histone Methylation across the Human Cell Cycle.  2012, Molecular and Cellular Biology, 2012, 32(13):2503-14.

86. Baliban, R.C.; Dimaggio, P. A.; Plazas-Mayorca, M.D.; Garcia, B. A., Floudas, C. A. Identification of modified and unmodified proteins via high-resolution mass spectrometry and mixed-integer linear optimization. Journal of Proteome Research, 2012 (under review)

85.  Van Aller GS, Reynoird N, Barbash O, Huddleston M, Liu S, Zmoos AF, McDevitt P, Sinnamon R, Le B, Mas G, Annan R, Sage J, Garcia BA, Tummino PJ, Gozani O, Kruger RG.  Smyd3 regulates cancer cell phenotypes and catalyzes histone H4 lysine 5 methylation. Epigenetics. 2012, 1;7(4). 

84. Zee, B.M., Garcia, B.A. Discovery of lysine post-translational modifications through mass spectrometric detection. Essays in Biochemistry, 2012, 52, 147-163.

83.  Ratnakumar K, Duarte LF, Leroy G, Hasson D, Smeets D, Vardabasso C, Bönisch C, Zeng T, Xiang B, Zhang DY, Li H, Wang X, Hake SB, Schermelleh L, Garcia BA, Bernstein E.  ATRX-mediated chromatin association of histone variant macroH2A1 regulates α-globin expression.  Genes Dev. 2012, 26(5):433-8.

82.  Yu Y, Song C, Zhang Q, Dimaggio PA, Garcia BA, York A, Carey MF, Grunstein M.  Histone H3 Lysine 56 Methylation Regulates DNA Replication through Its Interaction with PCNA.  Mol Cell. 2012, 46(1):7-17.

81. Green, E.M., Mas, G., Young, N.L., Garcia, B.A., Gozani, O.  Methylation of H4 lysines 5, 8 and 12 by yeast Set5 calibrates chromatin stress responses. Nat Struct Mol Biol.  2012, 19(3):361-3.              

80.  Kuo AJ, Cheung P, Chen K, Zee BM, Kioi M, Lauring J, Xi Y, Park BH, Shi X, Garcia BA, Li W, Gozani O.  NSD2 Links Dimethylation of Histone H3 at Lysine 36 to Oncogenic Programming.  Mol Cell. 2011, 44, (4):609-20.

79.  Plazas-Mayorca, M.D.;  Zee, B.M.; Young, N.L.; Baliban, R.C; Leroy, G.; Floudas, C.A.; Hake, S.B.; Garcia B.A.  Proteomic interrogation of human chromatin.  PLoS ONE, 2011, 6(9): e24747.
 
78.  Baliban, R.C., Sakellari, D., Li, Z., DiMaggio, P.A., Garcia, B.A., Floudas, C.A.  Novel protein identification methods for biomarker discovery via a proteomic analysis of periodontally healthy and diseased gingival crevicular fluid samples.  Journal of Clinical Periodontology, 2012, 3, 203-12.
 
77.  Britton, L.P.; Gonzales-Cope, M.; Zee, B.M.; Garcia, B.A.  Breaking the histone code with quantitative mass spectrometry.  Expert Rev. in Proteomics, 2011, 8, (5), 631-43.
 
76.  Korpal M., Ell, B,J,, Buffa, F.M., Ibrahim, T., Blanco, M.A., Celià-Terrassa, T., Mercatali, L., Khan, Z., Goodarzi, H., Hua, Y., Wei, Y., Hu, G., Garcia, B.A., Ragoussis, J., Amadori, D., Harris, A.L., Kang, Y.  Direct targeting of Sec23a by miR-200s influences cancer cell secretome and promotes metastatic colonization.  Nature Medicine, 2011, 17(9):1101-8. 
 

75.  Waldmann, T.; Izzo, A; Kamieniarz, K.; Richter, F.; Vogler, C.; Sarg, B.; Lindner H.; Young, N.L.; Mittler, G.; Garcia, B.A.; Schneider, R.  Methylation of H2AR29 is a novel repressive PRMT6 target.  Epigenetics and Chromatin, 2011, 4:11.

74.  Wu, L.; Zee, B.M.; Wang, Y.; Garcia, B.A.; Dou Y.  The RING finger protein MSL2 in the MOF complex Is an E3 ubiquitin ligase for H2B K34 and is involved in crosstalk with H3 K4 and K79 methylation.  Molecular Cell, 2011, 43(1):132-44.

73.  Yan, K.; Cao, Q.; Reilly, C.M.; Young, N.L.; Garcia, B.A.; Mishra, N.  Histone deacetylase 9 deficiency protects against effector T cell-mediated systemic autoimmunity.  Journal of Biological Chemistry, 2011, 286(33):28833-43.  

72.  Vedadi, M; Barsyte-Lovejoy, D.; Liu, F.; Rival-Gervier, S.; Allali-Hassani, A.; Labrie, V.; Wigle, T.J.; DiMaggio, P.A.; Wasney, G.A.; Siarheyeva, A.; Dong, A.; Tempel, W.; Wang, S.; Chen, X.; Chau, I.; Mangano, T.J.; Huang, X.; Simpson, C.D.; Pattenden, S.G.; Norris, J.L.; Kireev, D.B.; Tripathy, A.; Edwards, A.; Roth, B.L.; Janzen, W.P.; Garcia, B.A.; Petronis, A.; Ellis, J.; Brown, P.J.; Frye, S.V.; Arrowsmith, C.H.; Jin, J.   UNC0638: Potent, selective, and cell-penetrant chemical probe of protein lysine methyltransferases G9a and GLP.   Nat. Chem. Biol.,  2011,  7(8):566-74. 
 
71.   Young, N.L.; Garcia, B.A. Liquid Chromatography-Mass Spectrometry of Intact Proteins, a book chapter in "Protein and peptide analysis by LC-MS: Experimental strategies." Royal Society of Chemistry, 2011, 38-55.
 
70.  Zee, B.M.; Young, N.L.; Garcia, B.A.  Quantitative proteomic approaches to studying histone modifications.  Current Chemical Genomics, 2011, 5(Suppl 1):106-14.
 
69.  Hergeth, S.P.; Dundr, M.; Tropberger, P.; Zee, B.M.; Garcia, B.A.; Daujat, S.; Schneider, R.  Isoform specific phosphorylation of human linker histone H1.4 in mitosis by Aurora B kinase.  Journal of Cell Science, 2011,124, 1623-1628.
 
68.  Arnaudo, A.M.; Molden, R.C.  Garcia, B.A.,  Revealing histone variant induced chromatin changes via quantitative proteomics.  Crit Rev Biochem Mol Bio., 2011, 46(4):284-94.
 
67. Garcia, B.A.; Cooper, H.J.; Dorrestein, P.C.; Tang, K.; Ueberheide, B.M., Proteomics.  J Biomed Biotechnol. 2010;2010:453045.
 
66.  Zee, B.M.; Levin, R.S.; DiMaggio, P.A.; Garcia, B.A.  Global turnover of histone post-translational modifications and variants in human cells.  Epigenetics and Chromatin, 2010, 3:22. 
 
65.  Levy, D.; Kuo, A.J.; Chang, Y.; Schaefer, U.; Kitson, C.; Cheung, P.; Espejo, A.; Zee, B.M.; Tangsombatvisit, S.; Tennen, R.I.; Kuo, A.Y.; Tanjing, S.;  Liu, C.L.; Cheung, R.; Utz, P.J.; Chua, K.;  Shi, X.; Prinjha, R.; Garcia, B.A. Bedford, M.T.; Tarakhovsky, A.; Cheng, X.; Gozani, O.  Lysine methylation of the NF-κB subunit RelA by SETD6 couples activity of the histone methyltransferase GLP at chromatin to tonic repression of NF-κB signaling.  Nature Immunology, 2011, 12, (1), 29-36.
 
64.   Kapoor, A.; Goldberg, M.S.; CumberlandL.K.; Ratnakumar, K.;  Segura, M.F.; Emanuel, P.O.; Menendez, C.; Vardabasso, S.; LeRoy, G.; Vidal, C.I.; Polsky, D.; Osman, I.; Garcia, B.A.; Hernando, E.; Bernstein, E.  The histone variant macroH2A suppresses melanoma progression through regulation of CDK8.  Nature, 2010, 468, (7327), 1105-1109.
 
63.  Binda, O.; Leroy, G.; Bua, D.J.; Garcia, B.A.; Gozani, O.; Richard, S.  Trimethylation of histone H3 lysine 4 impairs methylation of histone H3 lysine 9: regulation of lysine methyltransferases by physical interaction with their substrates.  Epigenetics, 2010, 5, (8), 767-775.
 
62.  Young, N.L.; DiMaggio, P.A.; Garcia, B.A.  The significance, development and progress of high-throughput combinatorial histone code analysis.  Cellular and Molecular Life Sciences, 2010, 67, (23), 3983-4000.
 
61.  Qi, H.H.; Sarkissian, M.; Hu, G-Q.; Wang, Z.; Bhattacharjee, A.; Gordon, D.B.; Gonzales, M.; Lan, F.; Ongusaha, P.P.; Huarte, M.; Yaghi, N.K.; Lim, H.; Garcia, B.A.; Brizuela, L.; Zhao, K.; Roberts, T.M.; Shi, Y.  The mental retardation gene PHF8 mediates histone H4K20/H3K9 demethylation and regulates zebrafish brain apoptosis and craniofacial development.  Nature, 2010, 466, (7305), 503-507.
 
60.  Plazas-Mayorca, M.D.; Bloom, J.S.; Zeissler, U.; Leroy, G.; Young, N.L.; DiMaggio, P.A.; Krugylak, L.; Schneider, R.; Garcia, B.A.  Quantitative proteomics reveals direct and indirect alterations in the histone code following methyltransferase knockdown. Molecular BioSystems, 2010, 6, (9), 1719-1729. (2010 Emerging Investigators Issue)
 
59.  Olszewski, K.L.; Mather, M.W.; Morrisey, J.M.; Garcia, B.A.; Vaidya, A.B.; Rabinowitz, J.D.; Llinas, M.  Branched tricarboxylic acid metabolism in Plasmodium falciparum.  Nature, 2010, 466, (7307), 774-778.
 
58.  Weiss, T.; Hergeth, S.; Zeissler, U.; Izzo, A.; Tropberger, P.; Zee, B.M.; Dundr, M.; Garcia, B.A.; Daujat, S.; Schneider, R.  Histone H1 variant-specific lysine methylation by G9a/KMT1C and Glp/1/KMT1D.  Epigenetics and Chromatin, 2010, 3, (1), 7.
 
57.  DiMaggio, P.A.; Garcia, B.A.  Mass spectrometry based proteomics for interrogating the histone code. Current Proteomics, 2010, 7, (3), 177-187.
 
56.  Evertts, A.G.; Zee, B.M.; Garcia, B.A.  Modern approaches for investigating epigenetic signaling pathways.  Journal of Applied Physiology, 2010, 109, 927-933.
 
55.  Baliban, R.C.; Dimaggio, P. A.; Plazas-Mayorca, M.D.; Young, N. L.; Garcia, B. A.; Floudas, C. A.,  A novel approach for untargeted post-translational modification identification using integer linear optimization and tandem mass spectrometry. Mol Cell Proteomics, 2010, 9, (5), 764-79.
 
54.  Young, N.L.; Plazas-Mayorca, M.D.; Dimaggio, P. A.; Flaniken, I.Z.; Beltran, A.; Mishra, N.; LeRoy, G.; Floudas, C. A.; Garcia, B.A., Collective mass spectrometry approaches reveal broad and combinatorial post-translational modification of high mobility group protein A1a.  Journal of the American Society for Mass Spectrometry, 2010, 21, (5), 960-970.
 
53.  Young, N.L.; Plazas-Mayorca, M.D.; Garcia, B.A.  Systems-wide proteomic characterization of combinatorial post-translational modification patterns.  Expert Rev. in Proteomics, 2010, 7, (1), 79-92.
 
52.  Zee B.M.; Levin, R.S.; Xu, B.; LeRoy, G.; Wingreen, N.S.; Garcia, B.A., In vivo residue-specific histone methylation dynamics.  Journal of Biological Chemistry, 2010, 285, (5), 3341-50.
 
51.  Gaske, A.L.; Oliver, S.S.; Wagner, E.K.; Musselman, C.; LeRoy, G.; Garcia, B.A.; Kutateladze, T.; Denu, J.M., Combinatorial profiling of chromatin-binding modules reveals multi-site discrimination for post-translational modifications.  Nature Chem. Biol., 2010, (4), 283-90.
 
50.  Zee, B.M.; Garcia, B.A., Electron transfer dissociation facilitates sequencing of ADP-ribosylated peptides.  Analytical Chemistry, 2010, 82, (1), 28-31.
 
49.  Garcia, B.A., What does the future hold for top down mass spectrometry? Journal of the American Society for Mass Spectrometry, 2010, 21, (2), 193-202.
 
48.  Plazas-Mayorca, M.D.;  Zee, B.M.; Young, N.L.; Fingerman, I.M.; LeRoy, G.; Briggs, S.D.; Garcia B.A., One-pot shotgun quantitative mass spectrometry characterization of histones.  Journal of Proteome Research, 2009, 8, (11), 5367-74.
 
47.  Dimaggio, P. A.; Young, N. L.; Baliban, R. C.; Garcia, B. A.; Floudas, C. A., A mixed-integer linear optimization framework for the identification and quantification of targeted post-translational modifications of highly modified proteins using multiplexed ETD tandem mass spectrometry . Mol Cell Proteomics, 2009, 8, (11),  2527–2543 .
 
46.  Khan, Z.; Bloom, J.S.; Garcia, B.A.; Singh, M.; Krugylak, L., Protein quantification across hundreds of experimental conditions. PNAS, 2009, 106, (37),15544-8.
 
45.  Young, N. L.; Dimaggio, P. A.; Plazas-Mayorca, M. D.; Baliban, R. C.; Floudas, C. A.; Garcia, B. A., High-throughput characterization of combinatorial histone codes. Mol Cell Proteomics, 2009, 8, (10),  2266-84.  (Selected for Faculty of 1000).
 
44.  Basu, A.; Rose, K.L.; Zhang, J.; Beavis, R.C.; Ueberheide, B.; Garcia, B.A.; Chait, B.T.; Zhao, Y.; Hunt, D.F.; Segal, E.; Allis, C.D.; Hake, S.B., Proteome-wide prediction of acetylation substrates.  PNAS, 2009, 106, (33), 13785-90.                   
                                                                                                   

43.  Leroy, G.; Weston, J. T.; Zee, B. M.; Young, N. L.; Plazas-Mayorca, M. D.; Garcia, B. A., Heterochromatin protein 1 is extensively decorated with histone code-like post-translational modifications. Mol Cell Proteomics, 2009, 8, (11),  2432-42.

 42.  Leroy, G.; Plazas-Mayorca, M. D.; Young, N. L.; Garcia, B. A., Decoding the histone code by quantitative proteomics.  Mol Cell Proteomics, 8, (8), Supplement 1, S11, 2009.  
 
41.  Xie, W.; Song, C.; Young, N. L.; Sperling, A. S.; Xu, F.; Sridharan, R.; Conway, A. E.; Garcia, B. A.; Plath, K.; Clark, A. T.; Grunstein, M., Histone H3 lysine 56 acetylation is linked to the core transcriptional network in human embryonic stem cells. Mol Cell 2009, 33, (4), 417-27.
 
40.  Garcia, B. A., Mass spectrometric analysis of histone variants and post-translational modifications. Front Biosci (Schol Ed) 2009, 1, 142-53.
 
39.  El Gazzar, M.; Yoza, B. K.; Chen, X.; Garcia, B. A.; Young, N. L.; McCall, C. E., Chromatin-specific remodeling by HMGB1 and linker histone H1 silences proinflammatory genes during endotoxin tolerance. Mol Cell Biol 2009, 29, (7), 1959-71.
 
38.  Plazas-Mayorca, M.D.;  N.L. Young, N.L.; Garcia B.A., Identification of differentially expressed histone codes by mass spectrometry, American Biotechnology Laboratory Journal, 2009, 27(2), 10-12.
 
37.  Young, N.L.; Plazas-Mayorca, M.D.; Garcia, B.A., A method to separate and characterize modified forms of histones using cation-exchange HILIC chromatography and electron transfer dissociation-mass spectrometry, American Biotechnology Laboratory Journal, 2009, 27(1), 23-25.
 
36.  Garcia, B.A.; Mollah, S., Assessment of bioanalytical tools for characterization of histone acetylation and methylation. A chapter in “Protocols for the Bioanalytical Discovery of Post Translational Modifications”, Transworld Research Network, 2008, 179-204.
 
 
 
Pre-Princeton Publications
 
35.  Nicklay, J. J.; Shechter, D.; Chitta, R. K.; Garcia, B. A.; Shabanowitz, J.; Allis, C. D.; Hunt, D. F., Analysis of histones in Xenopus laevis. II. mass spectrometry reveals an index of cell type-specific modifications on H3 and H4. J Biol Chem 2009, 284, (2), 1075-85.
 
34.  Boyne, M. T.; Garcia, B. A.; Li, M.; Zamdborg, L.; Wenger, C. D.; Babai, S.; Kelleher, N. L., Tandem mass spectrometry with ultrahigh mass accuracy clarifies peptide identification by database retrieval. J Proteome Res 2009, 8, (1), 374-9.
 
33.  Garcia, B. A.; Thomas, C. E.; Kelleher, N. L.; Mizzen, C. A., Tissue-specific expression and post-translational modification of histone H3 variants. J Proteome Res 2008, 7, (10), 4225-36.
 
32.  Duncan, E. M.; Muratore-Schroeder, T. L.; Cook, R. G.; Garcia, B. A.; Shabanowitz, J.; Hunt, D. F.; Allis, C. D., Cathepsin L proteolytically processes histone H3 during mouse embryonic stem cell differentiation. Cell 2008, 135, (2), 284-94.
 
31.  Garcia, B. A.; Pesavento, J. J.; Mizzen, C. A.; Kelleher, N. L., Pervasive combinatorial modification of histone H3 in human cells. Nature Methods 2007, 4, (6), 487-9.
 
30.  Pesavento, J. J.; Garcia, B. A.; Streeky, J. A.; Kelleher, N. L.; Mizzen, C. A., Mild performic acid oxidation enhances chromatographic and top down mass spectrometric analyses of histones. Mol Cell Proteomics 2007, 6, (9), 1510-26.
 
29.  Garcia, B.A., Siuti, N.; Thomas, C.E.; Mizzen, C.A.; Kelleher, N.L., Characterization of neurohistone variants and post-translational modifications by electron capture dissociation mass spectrometry. Intl. J. of Mass Spec. 2007, 259, 184-196.
 
28.  Morris, S. A.; Rao, B.; Garcia, B. A.; Hake, S. B.; Diaz, R. L.; Shabanowitz, J.; Hunt, D. F.; Allis, C. D.; Lieb, J. D.; Strahl, B. D., Identification of histone H3 lysine 36 acetylation as a highly conserved histone modification. J Biol Chem 2007, 282, (10), 7632-40.
 
27.  Garcia, B. A.; Mollah, S.; Ueberheide, B. M.; Busby, S. A.; Muratore, T. L.; Shabanowitz, J.; Hunt, D. F., Chemical derivatization of histones for facilitated analysis by mass spectrometry. Nature Protocols 2007, 2, (4), 933-8.
 
26.  Luo, W.; Peterson, A.; Garcia, B. A.; Coombs, G.; Kofahl, B.; Heinrich, R.; Shabanowitz, J.; Hunt, D. F.; Yost, H. J.; Virshup, D. M., Protein phosphatase 1 regulates assembly and function of the beta-catenin degradation complex. EMBO J 2007, 26, (6), 1511-21.
 
25.  Garcia, B. A.; Shabanowitz, J.; Hunt, D. F., Characterization of histones and their post-translational modifications by mass spectrometry. Curr Opin Chem Biol 2007, 11, (1), 66-73.
 
24.  Garcia, B. A.; Hake, S. B.; Diaz, R. L.; Kauer, M.; Morris, S. A.; Recht, J.; Shabanowitz, J.; Mishra, N.; Strahl, B. D.; Allis, C. D.; Hunt, D. F., Organismal differences in post-translational modifications in histones H3 and H4. J Biol Chem 2007, 282, (10), 7641-55.
 
23.  Swiatek, W.; Kang, H.; Garcia, B. A.; Shabanowitz, J.; Coombs, G. S.; Hunt, D. F.; Virshup, D. M., Negative regulation of LRP6 function by casein kinase I epsilon phosphorylation. J Biol Chem 2006, 281, (18), 12233-41.
 
22.  Recht, J.; Tsubota, T.; Tanny, J. C.; Diaz, R. L.; Berger, J. M.; Zhang, X.; Garcia, B. A.; Shabanowitz, J.; Burlingame, A. L.; Hunt, D. F.; Kaufman, P. D.; Allis, C. D., Histone chaperone Asf1 is required for histone H3 lysine 56 acetylation, a modification associated with S phase in mitosis and meiosis. Proc Natl Acad Sci U S A 2006, 103, (18), 6988-93.
 
21.  Li, Y.; Kao, G. D.; Garcia, B. A.; Shabanowitz, J.; Hunt, D. F.; Qin, J.; Phelan, C.; Lazar, M. A., A novel histone deacetylase pathway regulates mitosis by modulating Aurora B kinase activity. Genes Dev 2006, 20, (18), 2566-79.
 
20.  Klimowski, L. K.; Garcia, B. A.; Shabanowitz, J.; Hunt, D. F.; Virshup, D. M., Site-specific casein kinase 1epsilon-dependent phosphorylation of Dishevelled modulates beta-catenin signaling. FEBS J 2006, 273, (20), 4594-602.
 
19.  Garcia, B. A.; Platt, M. D.; Born, T. L.; Shabanowitz, J.; Marcus, N. A.; Hunt, D. F., Protein profile of osteoarthritic human articular cartilage using tandem mass spectrometry. Rapid Commun Mass Spectrom 2006, 20, (20), 2999-3006.
 
18.  Hake, S. B.; Garcia, B. A.; Duncan, E. M.; Kauer, M.; Dellaire, G.; Shabanowitz, J.; Bazett-Jones, D. P.; Allis, C. D.; Hunt, D. F., Expression patterns and post-translational modifications associated with mammalian histone H3 variants. J Biol Chem 2006, 281, (1), 559-68.
 
17.  Garcia, B. A.; Joshi, S.; Thomas, C. E.; Chitta, R. K.; Diaz, R. L.; Busby, S. A.; Andrews, P. C.; Ogorzalek Loo, R. R.; Shabanowitz, J.; Kelleher, N. L.; Mizzen, C. A.; Allis, C. D.; Hunt, D. F., Comprehensive phosphoprotein analysis of linker histone H1 from Tetrahymena thermophila. Mol Cell Proteomics 2006, 5, (9), 1593-609.
 
16.  Yang, C. S.; Vitto, M. J.; Busby, S. A.; Garcia, B. A.; Kesler, C. T.; Gioeli, D.; Shabanowitz, J.; Hunt, D. F.; Rundell, K.; Brautigan, D. L.; Paschal, B. M., Simian virus 40 small t antigen mediates conformation-dependent transfer of protein phosphatase 2A onto the androgen receptor. Mol Cell Biol 2005, 25, (4), 1298-308.
 
15.  Garcia, B. A.; Busby, S. A.; Shabanowitz, J.; Hunt, D. F.; Mishra, N., Resetting the epigenetic histone code in the MRL-lpr/lpr mouse model of lupus by histone deacetylase inhibition. J Proteome Res 2005, 4, (6), 2032-42.
 
14.  Hake, S. B.; Garcia, B. A.; Kauer, M.; Baker, S. P.; Shabanowitz, J.; Hunt, D. F.; Allis, C. D., Serine 31 phosphorylation of histone variant H3.3 is specific to regions bordering centromeres in metaphase chromosomes. Proc Natl Acad Sci U S A 2005, 102, (18), 6344-9.
 
13.  Garcia, B. A.; Smalley, D. M.; Cho, H.; Shabanowitz, J.; Ley, K.; Hunt, D. F., The platelet microparticle proteome. J Proteome Res 2005, 4, (5), 1516-21.
 
12.  Garcia, B. A.; Barber, C. M.; Hake, S. B.; Ptak, C.; Turner, F. B.; Busby, S. A.; Shabanowitz, J.; Moran, R. G.; Allis, C. D.; Hunt, D. F., Modifications of human histone H3 variants during mitosis. Biochemistry 2005, 44, (39), 13202-13.
 
11.  Fischle, W.; Tseng, B. S.; Dormann, H. L.; Ueberheide, B. M.; Garcia, B. A.; Shabanowitz, J.; Hunt, D. F.; Funabiki, H.; Allis, C. D., Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylation. Nature 2005, 438, (7071), 1116-22.
 
10.  Garcia, B. A.; Shabanowitz, J.; Hunt, D. F., Analysis of protein phosphorylation by mass spectrometry. Methods 2005, 35, (3), 256-64.
 
9.  Syka, J. E.; Marto, J. A.; Bai, D. L.; Horning, S.; Senko, M. W.; Schwartz, J. C.; Ueberheide, B.; Garcia, B.; Busby, S.; Muratore, T.; Shabanowitz, J.; Hunt, D. F., Novel linear quadrupole ion trap/FT mass spectrometer: performance characterization and use in the comparative analysis of histone H3 post-translational modifications. J Proteome Res 2004, 3, (3), 621-6.
 
8.  Johnson, L.; Mollah, S.; Garcia, B. A.; Muratore, T. L.; Shabanowitz, J.; Hunt, D. F.; Jacobsen, S. E., Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications. Nucleic Acids Res 2004, 32, (22), 6511-8.
 
7.  Garcia, B. A.; Busby, S. A.; Barber, C. M.; Shabanowitz, J.; Allis, C. D.; Hunt, D. F., Characterization of phosphorylation sites on histone H1 isoforms by tandem mass spectrometry. J Proteome Res 2004, 3, (6), 1219-27.
 
6.  Tang, K.; Shahgholi, M.; Garcia, B. A.; Heaney, P. J.; Cantor, C. R.; Scott, L. G.; Williamson, J. R., Improvement in the apparent mass resolution of oligonucleotides by using 12C/14N-enriched samples. Anal Chem 2002, 74, (1), 226-31.
 
5.  Garcia, B. A.; Heaney, P. J.; Tang, K., Improvement of the MALDI-TOF analysis of DNA with thin-layer matrix preparation. Anal Chem 2002, 74, (9), 2083-91.
 
4.  Shahgholi, M.; Garcia, B. A.; Chiu, N. H.; Heaney, P. J.; Tang, K., Sugar additives for MALDI matrices improve signal allowing the smallest nucleotide change (A:T) in a DNA sequence to be resolved. Nucleic Acids Res 2001, 29, (19), E91.
 
3.  Liu, J.; Tseng, K.; Garcia, B.; Lebrilla, C. B.; Mukerjee, E.; Collins, S.; Smith, R., Electrophoresis separation in open microchannels. A method for coupling electrophoresis with MALDI-MS. Anal Chem 2001, 73, (9), 2147-51.
 
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