## Yannis Kevrekidis

### Selected Publications

- “An effcient Newton Krylov Implementation of the Constrained Runs Scheme for initializing on a slow manifold.” J. Sci. Comp. 39 pp.167-188 2009 [with C. Vandekerckhove, and D. Roose].
- “Inherent noise can facilitate coherence in collective swarm motion.” PNAS 106[14] pp.5464-5469 2009 [with C. A. Yates, R. Erban, C. Escudero, I. D. Couzin, J. Buhl, P. K. Maini and D. J. T. Sumpter].
- “Coarse-graining the computations of surface reactions: nonlinear dynamics from atomistic simulators.” Surf. Sci., 603 pp.1696-1705 2009 [with A. G. Makeev].
- “Protected peptide nanoparticles: experiments and Brownian dynamics simulations of the energetics of assembly.” Nanoletters 9[6] pp.2218-2222 2009 [with T. Chen, S. D'Addio, M. Kennedy, A. Swietlow, A. Z. Panagiotopoulos, and R. K. Prud'homme].
- “Analysis of the accuracy and convergence of equation-free projection to a slow manifold.” Math. Mod. Num. Anal. 43[4] pp.757-784 2009 [with A. Zagaris, C. W. Gear, and T. J. Kaper].
- “Coarse-graining the dynamics of a driven interface in the presence of mobile impurities: effective description via diffusion maps.” Phys. Rev. E 80 031102 2009.” [with B. Sonday, and M. Haataja].
- “Detecting the slow manifold by anisotropic diffusion maps.” PNAS, pnas.0905547106, September 2009 [with A. Singer, R. Erban and R. Coifman].
- “Analysis of a stochastic chemical system close to the SNIPER bifurcation of its mean-field model.” to SIAM J. Appl. Math. 70[3] pp.984-1016 2009 [with R. Erban, S. J. Chapman, and T. Vejchodsky].
- “Exploration of effective potential landscapes using coarse reverse integration.” J. Chem. Phys. 131 134104 2009 [with T. A. Frewen, and G. Hummer].
- “Periodically forced finite networks of heterogeneous coupled oscillators: a low-dimensional approach.” Physica D 237 pp.207-215 2008; math.DS/0612412 [with C. R. Laing].
- “Enhancement of surface activity in Co oxidation on Pt[110] through spatiotemporal laser actuation.” Phys Rev E 77 036214 2008 [with L. Qiao, X. Li, C. Punckt and H. H. Rotermund].
- “Computational coarse-graining of a randomly forced 1-D Burgers equation.” Phys. Fluids 20 035111 2008 [with S. Ahuja, and V. Yakhot].
- “Uncertainty quantification for atomistic reaction models: an equation-free stochastic simulation algorithm example.” SIAM MMS 6[4] pp.1217-1233 2008 math.DS/0610444 at arXiv.org [with Yu Zou].
- “Multiscale Integration Schemes for Jump-Diffusion Systems.” SIAM MMS 7[2] pp.495-516 2008 [with D. Givon].
- “Equation-free implementation of statistical moment closures.” Phys. Rev. E. 77 026071 2008 [with F. J. Alexander, G. Johnson, and G. L. Eyink].
- “Robust Oscillations in SIS Epidemics on Adaptive Networks: Coarse graining by automated moment closure.” Europhys. Letters 82 38004 2008 [nlin.AO/0702047] [with T. Gross].
- “Coarse Analysis of Collective Motion with Different Communication Mechanisms.” Math. Biosci., 214 pp.49-57 2008 [with A. Kolpas, J. Moehlis, and T. A. Frewen].
- “Newton-Krylov solvers for the equation-free computation of coarse traveling waves.” CMAME 197 pp.3480-3491 2008 [with G. Samaey, W. Vanroose, and D. Roose].
- “Drops, Slugs and Flooding in Polymer Electrolyte Membrane Fuel Cells.” AIChE J. 54[5] 1313-1332 2008 [with E. Kimball, T. Whitaker, and J. B. Benziger].
- “Diffusion maps, Reduction Coordinates and Low Dimensional Representation of Stochastic Systems.” SIAM MMS, 7[2] pp.842-864 2008 [with R. Coifman, S. Lafon, M. Maggioni and B. Nadler].
- “Stability of Quantized Vortices in a Bose-Einstein condensate confined in Optical Lattice.” Phys. Rev. A 77 053612 2008 [with K. J. H. Law, L. Qiao, P. G. Kevrekidis].
- “Order-to-disorder transformations in inert-gas adsorbates on graphite substrates.” J. Chem. Phys. 129 184106 2008 [with M. Amat, M. Arienti, V. Fonoberov, and D. Maroudas].
- “Mass transport of alkali metal with pulses in a surface reaction.” Phys. Rev. E. 78 055203[R] 2008 [with L. Hong, H. Uecker, M. Hinz, L. Qiao, S. Guenther, A. Locatelli and R. Imbihl].
- “Coarse-Grained Analysis of Stochasticity-Induced Switching between Collective Motion States.” Proc. Nat. Acad. Sci. U.S.A., 104, 5931, 2007 [with A. Kolpas and J. Moehlis].
- “Slow Observables of Singularly Peturbed Differential Equations.” Nonlinearity, 20, 2463, 2007 [with Z. Artstein, M. Slemrod, and E.S. Titi].
- “Coarse-Grained Dynamics of an Activity Bump in a Neural Field Model.” Nonlinearity, 20, 2127, 2007 [with C.R. Laing and T.A. Frewen].
- “Bistability and Oscillations in the Huang-Ferrell Model of MAPK Signaling.” PLoS. Comp. Biol., 3, 1819, 2007 [with L. Qiao, R.B. Nachbar, and S.Y. Shvartsman].
- “An Equation-Free Approach to Analyzing Heterogeneous Cell Population Dynamics.” J. Math. Biol., 55, 331, 2007 [with K.A. Bold, Y. Zou, and M.A. Henson].
- “Reduced Computations for Nematic Liquid Crystals: A Time-Stepper Approach for Systems with Continuous Symmetries.” J. Non-Newtonian Fluid Mech., 146, 51, 2007 [with C. Siettos and L. Russo].
- “Deciding the Nature of the Coarse Equation through Microscopic Simulations: The Baby-Bathwater Scheme.” SIAM Review, 49, 469, 2007 [with J. Li, P.G. Kevrekidis, and C.W. Gear].
- “Projective and Coarse Projective Integration for Problems with Continuous Symmetries.” J. Comp. Phys., 225, 382, 2007 [with M.E. Kavousanakis, R. Erban, A.G. Boudouvis, and C.W. Gear].
- “Reaction Dynamics in a Parallel Flow Channel PEM Fuel Cell.” J. Electrochem. Soc., 154, B835, 2007 [J. Benziger, J.E. Chia, and E. Kimball].
- “The Effect of Co-Adsorbed Oxygen on the Adsorption and Diffusion of Potassium on Rh(110): A First-Principles Study.” J. Phys. Chem. C, 111, 7446, 2007 [with Y. Xu, H. Marbach, R. Imbihl, and M. Mavrikakis].
- “Acceleration Method for Coarse-Grained Numerical Solution to the Boltzmann Equation.” J. Fluids. Eng., 129, 908, 2007 [with H.A. Al-Mohssen, and N.G. Hadjiconstantinou].
- “General Tooth Boundary Conditions for Equation Free Modeling.” SIAM J. Sci. Comp., 29, 1495, 2007 [with A.J. Roberts].
- “A Computer-Assisted Study of Global Dynamic Transitions for a Non-Invertible System.” Int. J. Bifurc. Chaos., 17, 1305, 2007 [with R.A. Adomaitis and R. de la Llave].
- “Coarse-Grained Computations of Demixing in Dense Gas-Fluidized Beds.” Phys. Rev. E., 75, 051309, 2007 [with S.J. Moon and S. Sundaresan].
- “Dynamics of Polydisperse Irreversible Adsorption: A Pharmacological Example.” Math. Mod. Math. Appl Sci., 17, 759, 2007 [with R. Erban, J. Chapman, K.D. Fisher, and L.W. Seymour].
- “Coarse Molecular-Dynamics Analysis of Stress-Induced Structural Transitions in Crystals.” Appl. Phys. Lett., 90, 171910, 2007 [with M.A. Amat and D. Maroudas].
- “Gyration-Radius Dynamics in Structural Transitions of Atomic Clusters.” J. Chem. Phys., 126, 124102, 2007 [with T. Yanao, W.S. Koon, and J.E. Marsden].
- “Variable-Free Exploration of Stochastic Models: A Gene Regulatory Network Example.” J. Chem. Phys., 126, 155103, 2007 [with R. Erban, T.A. Frewen, X.A. Wang, T.C. Elston, R. Coifman, and B. Nadler].
- “Heterogeneous Animal Group Models and their Group-Level Alignment Dynamics: An Equation-Free Approach.” J. Theor. Biol., 246, 100, 2007 [with S.J. Moon, B. Nabet, N.E. Leonard, and S.A. Levin].
- “Condition Estimates for Pseudo-Arclength Continuation.” SINUM, 45, 263, 2007 [with K.I. Dickson, C.T. Kelley, and I.C.F. Ipsen].
- “Variance Reduction for the Equation-Free Simulation of Multiscale Stochastic Systems.” SIAM MMS., 6, 70, 2007 [with A. Papavasiliou].
- “Ignition and Front Propagation in Polymer Electrolyte Membrane Fuel Cells.” J. Phys. Chem. C, 111, 2330, 2007 [with J.B. Benziger, E.S. Chia, and Y. De Decker].
- “Template-Based Stabilization of Relative Equilibria in Systems with Continuous Symmetry.” J. Nonlinear Sci., 17, 109, 2007 [with S. Ahuja and C.W. Rowley].
- “Strong Convergence of Projective Integration Schemes for Singularly Perturbed Stochastic Differential Systems.” Comm. Math. Sci., 4, 707, 2006 [D. Givon and R. Kupferman].
- “Spatially Distributed Stochastic Systems: Equation-Free and Equation-Assisted Bifurcation Analysis.” J. Chem. Phys., 125, 204108, 2006 [with L. Qiao, R. Erban, and C.T. Kelley].
- “The STR-PEM Fuel Cell as a Reactor Building Block.” AIChE J., 52, 3902, 2006 [with E. Chia and J.B. Benziger].
- “Equation-Free Particle-Based Computations: Coarse Projective Integration and Coarse Dynamic Renormalization in 2D.” Ind. Eng. Chem., 45, 7002, 2006 [with Y. Zou and R. Ghanem].
- “Particle Simulation of Vibrated Gas-Fluidized Beds of Cohesive Fine Powders.” Ind. Eng. Chem., 45, 6966, 2006 [with S.-J. Moon and S. Sundaresan].
- “Coarse Molecular-Dynamics Determination of the Onset of Structural Transitions: Melting of Crystalline Solids.” Phys. Rev. B, 74, 132201, 2006 [with M. Amat and D. Maroudas].
- “An Equation-Free Approach to Coupled Oscillator Dynamics: The Kuramoto Model Example.” Int. J. Bifurc. Chaos, 16, 2043-2052, 2006 [with S.-J. Moon].
- “An Equation-Free Approach to Nonlinear Control: Feedback Linearization with Pole-Placement.” Int. J. Bifurc. Chaos, 16, 2029, 2006 [with C.I. Siettos and N. Kazantzis].
- “Compaction and Dilation Rate Dependence of Stresses in Gas-Fluidized Beds.” Phys. Fluids, 18, 083304, 2006 [with S.J. Moon and S. Sundaresan].
- “A Systems-Based Approach to Multiscale Computation: Equation-Free Detection of Coarse-Grained Bifurcations.” Comp. Chem. Eng., 30, 1632, 2006 [with C. Siettos and R. Rico-Martinez].
- “Equation-Free Dynamic Renormalization in a Glassy Compaction Model.” Phys. Rev. E, 74, 016702, 2006 [with L. Chen and P.G. Kevrekidis].
- “The Moment Map: Nonlinear Dynamics of Density Evolution via a Few Moments.” SIADS, 5, 403, 2006 [with D. Barkley, and A.M. Stuart].
- “Diffusion Maps, Spectral Clustering and the Reaction Coordinates of Dynamical Systems.” Appl. Comp. Harm. Anal., 21, 113, 2006 [with B. Nadler, S. Lafon, and R.C. Coifman].
- “Experimental Study of a Neimark-Sacker Bifurcation in Axially Forced Taylor-Couette Flow.” J. Fluid. Mech. 558, 1, 2006 [with M. Sinha and A.J. Smits].
- “Multiscale Analysis of Re-Entrant Production Lines: An Equation-Free Approach.” Physica A, 363, 1, 2006 [with Y. Zou and D. Armbruster].
- “Oxidation of Aliphatic and Aromatic Sulfides Using Sulfuric Acid.” Ind. Eng. Chem. Res., 45, 518, 2006 [with J. Nehlsen and J.B. Benziger].
- “Guiding Chemical Pulses through Geometry: Y Junctions.” Phys. Rev. E, 73, 036219, 2006 [L. Qiao, C. Punckt, and H.H. Rotermund].
- “Geometry-Induced Pulse Instability in Microdesigned Catalysts: The Effect of Boundary Curvature.” Phys. Rev. E, 73, 036217, 2006 [L. Qiao, C. Punckt, and H.H. Rotermund].
- “An Equation-Free Approach to Coupled Oscillator Dynamics.” Phys. Rev. Lett., 96, 144101, 2006 [S.-J. Moon and R. Ghanem].
- “The Power Performance Curve for Engineering Analysis of Fuel Cells.” J. Power Sources, 155, 272, 2006 [J.B. Benziger, B. Satterfield, W.H.J. Hogarth, and J.P. Nehlsen]
- “Gene Regulatory Networks: A Coarse-Grained, Equation-Free Approach to Multiscale Computation.” J. Chem. Phys., 124, 084106, 2006 [R. Erban, D. Adalsteinsson, and T.C. Elston].
- “Equation-Free Dynamic Renormalization of a KPZ-type Equation.” Phys. Rev. E., 73, 036703, 2006 [with D.A. Kessler and L. Chen].
- “An Equation-Free Computational Approach for Extracting Population-Level Behavior from Individual-Based Models of Biological Dispersal.” Physica D, 215, 1, 2006 [R. Erban and H.G. Othmer].
- “Patch Dynamics with Buffers for Homogenization Problems.” J. Comp. Phys., 213, 264, 2006 [G. Samaey and D. Roose].
- “Equation-Free, Coarse Grained Computational Optimization Using Time-Steppers.” Chem. Eng. Sci., 61, 779, 2006 [ A. Bindal, M.G. Ierapetritou, S. Balakrishnan, A. Armaou, and A.G. Makeev].
- “Equation-Free Dynamic Renormalization: Self-Similarity in Multidimensional Particle System Dynamics.” Phys. Rev. E, 72, 046702, 2005 [with Y. Zou and R. Ghanem].
- “Constraint-Defined Manifolds: A Legacy-Code Approach to Low-Dimensional Computations.” J. Sci. Comp., 25, 17, 2005 [with C.W. Gear].
- “Coarse-Grained Numerical Bifurcation Analysis of Lattice Boltzmann Models.” Physica D, 210, 58, 2005 [with P. van Leemput and K.W.A. Lust].
- “Geometric Diffusions for the Analysis of Data From Sensor Networks.” Curr.Opin. Neurobiol., 15, 576, 2005 [with R.R. Coifman, M. Maggioni, and S.W. Zucker].
- “Projecting on a Slow Manifold: Singularly Peturbed Systems and Legacy Codes.” SIADS, 4, 711, 2005 [with C.W. Gear, T.J. Kaper, and A. Zagaris].
- “Equation-Free Optimal Switching Policies for Bistable Reacting Systems Using Coarse Time-Steppers.” Int. J. R.N.C., 15, 713, 2005 [with A. Armaou].
- “Equation-Free, Multiscale Computation for Unsteady Random Diffusion.” SIAM MMS, 4, 915, 2005 [with D. Xiu].
- “Coarse Nonlinear Dynamics of Filling-Emptying Transitions: Water in Carbon Nanotubes.” Phys. Rev. Lett., 95, 130603, 2005 [with S. Sriraman and G. Hummer].
- “Core Collapse via Coarse Dynamic Renormalization.” Phys. Rev. Lett., 95, 081102, 2005 [with A. Szell and D. Merritt].
- “Optical Imaging and Control of Genetically Designated Neurons in Functional Circuits.” Ann. Rev. Neurosci., 28, 533, 2005 [with G. Miesenboeck].
- “Equation-Free/Galerkin-Free POD-Assisted Computation of Incompressible Flows.” J. Comp. Phys., 207, 568, 2005 [with S. Sirisup, D. Xiu, and G.E. Karniadakis].
- “A Parrinello-Rahman Approach to Vortex Lattices.” Phys. Lett. A., 341, 128, 2005 [with R. Carretero-Gonzalez, P.G. Kevrekidis, D. Maroudas, and D.J. Frantzeskakis].
- “Application of Coarse Integration to Bacterial Chemotaxis.” SIAM MMS, 4, 307, 2005 [with S. Setayeshgar, C.W. Gear, and H.G. Othmer].
- “The Gap-Tooth Scheme for Homogenization Problems.” SIAM MMS, 4, 278, 2005 [with G. Samaey and D. Roose].
- “Coarse Master Equation from Bayesian Analysis of Replica Molecular Dynamic Simulations.” J. Phys. Chem., 109, 6479, 2005 [with S. Sriraman and G. Hummer].
- "The Dynamic Response of PEM Fuel Cells to Changes in Load." Chem. Eng. Sci., 60, 1743, 2005 [with J. Benziger, E. Chia and J.F. Moxley].
- “An Equation-Free, Multiscale Approach to Uncertainty Quantification.” IEEE Comp. Sci. Eng., 7, 16, 2005 [D. Xiu, and R. Ghanem].
- “Effective Equations for Discrete Systems: A Time Stepper Based Approach.” Int. J. Bifurcations Chaos., 15, 975, 2005 [with J. Moeller, O. Runborg, P.G. Kevrekidis, and K. Lust].
- "Coarse-Grained Kinetic Computations for Rare Events: Application to Micelle Formation." J. Chem. Phys., 122, 044908, 2005 [with D.I. Kopelevich and A.Z. Panagiotopoulos].
- "Coarse-Grained Computations for a Micellar System." J. Chem. Phys., 122, 044907, 2005 [with D.I. Kopelevich and A.Z. Panagiotopoulos].
- “Coarse Multiscale Computation.” Abstr. Papers Amer. Chem. Soc., 225, U704, 2004 [with D.I. Kopelevich and A.Z. Panagiotopoulos].
- “A Process for the Removal of Thiols from a Hydrocarbon Stream by a Heterogeneous Reaction with Lead Oxide.” Energy & Fuels, 18, 721, 2004 [with J.P. Nehlsen and J.B. Benziger].
- “Bifurcation Analysis of Nonlinear Reaction-Diffusion Problems Using Wavelet-Based Reduction Techniques.” Comp. & Chem. Eng., 28, 557, 2004 [with J. Krishnan and O. Runborg].
- “Vortices in Bose-Einstein Condensates: Some Recent Developments.” Modern Phys. Lett. B, 18, 1481, 2004 [with P.G. Kevrekidis, R. Carretero-Gonzalez, and D.J. Frantzeskakis].
- “Water Balance and Multiplicity in a Polymer Electrolyte Membrane Fuel Cell.” AIChE J., 50, 2320, 2004 [with E-S.J. Chia and J.B. Benziger].
- “Optimal Sensor Location and Reduced Order Observer Design for Distributed Process Systems.” Comp. Chem. Eng., 281, 27, 2004 [with A.A. Alonso, J.R. Banga, and C.E. Frouzakis].
- “Time-Steppers and Coarse Control of Microscopic Distributed Processes.” Int. J. Robust and Nonlinear Control, 14, 89, 2004. [with A. Armaou and C.I. Siettos].
- “Distributed Nonlinear Control of Diffusion-Reaction Processes.” Int. J. Robust and Nonlinear Control, 14, 133, 2004 [with S. Dubljevic and P.D. Christofides].
- “Computing in the Past with Forward Integration.” Phys. Lett. A, 321, 335, 2004 [with C.W. Gear].
- “Application of Wavelet-Based Reduction Techniques to Nonlinear Reaction-Transport Problems.” Comp. Chem. Eng., 28, 557, 2004 [with J. Krishnan and O. Runborg].
- “Remarks on a Smoluchowski Equation.” Discrete and Continuous Dynamical Systems, 111, 101, 2004 [with P. Constantin and E.S. Titi].
- “Coarse Bifurcation Diagrams via Microscopic Simulators: a State-Feedback Control-Based Approach.” Int. J. Bif. Chaos., 141, 207, 2004 [with C.I. Siettos and D. Maroudas].
- “Apparent Hysteresis in a Driven System with Self-Organized Drag.” Phys. Rev. Lett., 9216, 160603, 2004 [with M. Haataja and D. Srolovitz].
- “Coarse Projective kMC Integration: Forward/Reverse Initial and Boundary Value Problems.” J. Comp. Phys., 1962, 474, 2004 [with R. Rico-Martinez and C.W. Gear].
- “Equation-Free Multiscale Computations for a Lattice-Gas Model: Coarse-Grained Bifurcation Analysis of the NO+CO Reaction on Pt100.” Chem. Eng. Sci., 598, 1733, 2004 [with A.G. Makeev].
- “Coarse Bifurcation Studies of Bubble Flow Lattice Boltzmann Simulations.” Chem. Eng. Sci., 59, 2357, 2004 [with C. Theodoropoulos, K. Sankaranarayanan, and S. Sundaresan].
- “Equation-Free: The Computer-Assisted Analysis of Complex Multiscale Systems.” AIChE J., 507, 1346, 2004 [with C.W. Gear and G. Hummer].
- “Optimal Sensor Placement for State Re-construction of Distributed Process Systems.” AIChE J., 507, 1438, 2004 [with A.A. Alonso and C.E. Frouzakis].
- “The Stirred Tank Reactor Polymer Electrolyte Membrane Fuel Cell.” AIChE J., 50, 1889, 2004 [with J.B. Benziger, E-S.J. Chia, E. Karnas, J. Moxley, and C. Teuscher].
- “Dragging Bistable Fronts.” Physica Scripta, 69, 451, 2004 [with P.G. Kevrekidis, B.A. Malomed, H.E. Nistazakis, and D.J. Frantzeskakis].
- “From Molecular Dynamics to Coarse Self-Similar Solutions: A Simple Example Using Equation-Free Computation.” JNNFM, 120, 215, 2004 [with L. Chen, P.G. Debenedetti, and C.W. Gear].
- “Steady State Multiplicity in a Polymer Electrolyte Membrane Fuel Cell.” AIChE J., 509, 2320, 2004. [with E-S.J. Chia and J.B. Benziger].
- “Equation-Free Modeling of Evolving Diseases: Coarse-Grained Computations with Individual-Based Models.” Proc. Roy. Soc. London, 4602050, 27621, 2004 [with J. Cisternas, C.W. Gear, and S. Levin].
- “Asymptotic States of a Smoluchowski Equation.” Arch. Rat. Mech. Anal., 174, 365, 2004 [with P. Constantin and E.S. Titi].
- “Vortices in Bose-Einstein Condensates: Some Recent Developments.” Mod. Phys. Lett. B, 18, 1481, 2004 [with P.G. Kevrekidis, M. Garretero-Gonzalex, and D.J. Frantzeskakis].
- “Nonlinear Dynamics Analysis Through Molecular Dynamics Simulations.” In Multiscale Modeling and Simulation, S. Attinger and P. Koumoutsakos, eds., Lecture Notes in Computational Science and Engineering, 39, Springer Verlag, p. 69, 2004 [with J. Li and S. Yip].
- “Exploration of Coarse Free Energy Surfaces Templated on Continuum Numberical Methods.” In Multiscale Modeling and Simulation, S. Attinger and P. Koumoutsakos, eds., Lecture Notes in Computational Science and Engineering, 39, Springer Verlag, p. 81, 2004 [with D. Passerone].
- “Damping Factors for the Gap-Tooth Scheme.” In Multiscale Modeling and Simulation, S. Attinger and P. Koumoutsakos, eds., Lecture Notes in Computational Science and Engineering, 39, Springer Verlag, p. 93, 2004 [with G. Samaey and D. Roose].
- “A Comparative Study of Lattice Boltzmann and Front-Tracking Finite-Difference Methods for Bubble Simulations.” Int. J. Multiphase Flow, 29, 109, 2003 [with K. Sankaranarayanan, S. Sundaresan, J. Lu, and G. Tryggvason].
- “CO Oxidation on Thin Pt. Crystals: Temperature Slaving and the Derivation of Lumpedmodels.” J. Chem. Phys., 188, 1, 2003 [with J. Cisternas, P. Holmes, and X. Li].
- “Nonlinear Model reduction for Dynamic Analysis of Cell Population Models.” Chem. Eng. Sci., 58, 429, 2003 [with Y. Zhang and M.A. Henson].
- “Focusing Revisited: A Renormalization/Bifurcation Approach.” Nonlinearity, 16, 497, 2003 [with C. Siettos and P.G. Kevrekidis].
- “Adaptive Detection of Bifurcations: an Experimental Feasibility Study.” Physica D, 176, 1, 2003 [with R. Rico-Martinez, K. Krischer, G. Flaetgen, and J.S. Anderson].
- “Gentle Dragging of Reaction Waves.” Phys. Rev. Lett., 90, 018302, 2003 [with J. Wolff, A.G. Papathanasiou, H.H. Rotermund, G. Ertl, and X. Li].
- “Buckling in Response to Applied Heat Sources.” Physica D, 177, 71, 2003 [with J. Cisternas and P. Holmes].
- “A Route to Computational Chaos Revisited.” Physica D, 177, 101, 2003 [with C. E. Frouzakis and B.B. Peckham].
- “Projective Methods for Stiff Differential Equations: Problems with Gaps in Their Eigenvalue Spectrum.” SIAM J. Sci. Comp., 24, 1091, 2003 [with C.W. Gear].
- “Telescopic Projective Integrators for Stiff Differential Equations.” J. Comp. Phys., 187, 95, 2003 [with C.W. Gear].
- “Coarse Brownian Dynamics for Nematic Liquid Crystals: Bifurcation, Projective Integration and Control Via Stochastic Simulation.” J. Chem. Phys., 11822, 10149; 2003 [with C. Siettos and M.D. Graham].
- “Wave Initiation Through Spatiotemporally Controllable Perturbations.” Phys. Rev. Lett., 9014, 1483014, 2003 [with J. Wolff, A.G. Papathanasiou, H.H. Rotermund, G. Ertl, M.A. Katsoulakis, and X. Li].
- “Local Manipulation of Catalytic Surface Reactivity.”, J. Catal., 216, 246, 2003 [with J. Wolff, A.G. Papathanasiou, H.H. Rotermund, G. Ertl, and X. Li].
- “Bifurcation and Stability Analysis of Rotating Chemical Spirals in Circular Domains: Boundary-Induced Meandering and Stabilization.” Phys. Rev. E., 67, 0561267, 2003 [with M. Baer and A.K. Bangia].
- “Coupling Fields and Underlying Space Curvature: an Augmented Lagrangian Approach.” Phys. Rev. E, 67, 0476024, 2003 [with P.G. Kevrekidis, F.L. Williams, A.R. Bishop, and B.A. Malomed].
- “Dark-in-Bright Solitons in Bose-Einstein Condensates with Attractive Interactions.” New J. Physics, 5, 64.1, 2003 [with P.G. Kevrekidis, D.J. Frantzeskakis, B.A. Malomed, and A.R. Bishop].
- “Coarse Molecular Dynamics of a Peptide Fragment: Free Energy, Kinetics and Long Time Dynamics Computations.” J. Chem. Phys., 11823, 10762, 2003 [with G. Hummer].
- “Enabling Stability Analysis of Tubular Reactor Models Using PDE/PDAE Solvers.” Comp. Chem. Eng., 27, 951, 2003 [with E.D. Koronaki and A.G. Boudouvis].
- “Microscopic/Stochastic Timesteppers and Coarse Control: A Kinetic Monte Carlo Example.” AIChE J., 497, 1922, 2003 [with C.I. Siettos, A. Armaou, and A.G. Makeev].
- “Oscillatory Thermomechanical Instability of an Ultrathin Catalyst.” Science, 300, 1932, 2003. [with F. Cirak, J.E. Cisternas, A.M. Cuitino, G. Ertl, P. Holmes, M. Ortiz, H.H. Rotermund, M. Schunack, and J. Wolff].
- “Reduction and Reconstruction for Self-Similar Dynamical Systems.” Nonlinearity, 16, 1257, 2003 [with C.W. Rowley, J.E. Marsden, and K. Lust].
- “Deciding the Nature of the Coarse Equation through Microscopic Simulation: the Baby-Bathwater Scheme.” SIAM MMS, 13, 391, 2003 [with J. Li, P.G. Kevrekidis, and C.W. Gear].
- “The Gaptooth Method in Particle Simulations.” Phys. Lett. A, 316, 190, 2003. [with C.W. Gear and J. Li].
- “Guidance of Matter Waves Through Y-Junctions.” Phys. Lett. A, 317, 513, 2003 [with P.G. Kevrekidis, D.J. Frantzeskakis, and G. Theocaris].
- “An Exploding Glass?” Phys. Lett. A, 318, 364, 2003 [with P.G. Kevrekidis and S. Kumar].
- “Equation-Free Coarse-Grained Multiscale Computation: Enabling Microscopic Simulators to Perform System-Level Tasks.” Comm. Math. Sciences, 14, 715, 2003 [with C.W. Gear, J.M. Hyman, P.G. Kevrekidis, O. Runborg, and K. Theodoropoulos].
- “Removal of Alkanethiols from a Hydro-carbon Mixture by Heterogeneous Reaction with Metal Oxides.” Ind. Eng. Chem., 4226, 6919, 2003. [with J.P. Nehlsen and J.B. Benziger].
- “Enabling Dynamic Process Simulators to Perform Alternative Tasks: A Time-Stepper Based Toolkit for Computer-Aided Analysis.” Ind. Eng. Chem. Res., 4226, 6795, 2003 [with C.I. Siettos and C.C. Pantelides].